Information for 3-GGGTCAAA (Motif 3)

C T A G A C T G C A T G C A G T G T A C G C T A C T G A G C T A
Reverse Opposite:
C G A T A G C T C G A T C A T G G T C A G T A C T G A C G A T C
p-value:1e-34
log p-value:-7.855e+01
Information Content per bp:1.591
Number of Target Sequences with motif1049.0
Percentage of Target Sequences with motif19.95%
Number of Background Sequences with motif6127.5
Percentage of Background Sequences with motif13.79%
Average Position of motif in Targets97.8 +/- 54.4bp
Average Position of motif in Background100.2 +/- 58.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0030.1_Hnf4a_1/Jaspar

Match Rank:1
Score:0.83
Offset:-6
Orientation:forward strand
Alignment:------GGGTCAAA---
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G C A T G C A G T G T A C G C T A C T G A G C T A A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GGGTCAAA
AGGTCA--
 C T A G A C T G C A T G C A G T G T A C G C T A C T G A G C T A
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:3
Score:0.78
Offset:-6
Orientation:reverse strand
Alignment:------GGGTCAAA---
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G C A T G C A G T G T A C G C T A C T G A G C T A A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

Hnf4a/MA0114.3/Jaspar

Match Rank:4
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GGGTCAAA-------
GGGGTCAAAGTCCAAT
 A C G T C T A G A C T G C A T G C A G T G T A C G C T A C T G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.76
Offset:-6
Orientation:forward strand
Alignment:------GGGTCAAA
NRBCARRGGTCA--
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G C A T G C A G T G T A C G C T A C T G A G C T A
T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:6
Score:0.76
Offset:-6
Orientation:forward strand
Alignment:------GGGTCAAA---
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G C A T G C A G T G T A C G C T A C T G A G C T A A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GGGTCAAA
AGRGGTCA--
 A C G T A C G T C T A G A C T G C A T G C A G T G T A C G C T A C T G A G C T A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:8
Score:0.76
Offset:-6
Orientation:forward strand
Alignment:------GGGTCAAA--
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G C A T G C A G T G T A C G C T A C T G A G C T A A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

RXRB/MA0855.1/Jaspar

Match Rank:9
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GGGTCAAA-----
GGGGTCAAAGGTCA
 A C G T C T A G A C T G C A T G C A G T G T A C G C T A C T G A G C T A A C G T A C G T A C G T A C G T A C G T
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

RXRG/MA0856.1/Jaspar

Match Rank:10
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GGGTCAAA-----
GGGGTCAAAGGTCA
 A C G T C T A G A C T G C A T G C A G T G T A C G C T A C T G A G C T A A C G T A C G T A C G T A C G T A C G T
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A