Information for 24-NAGATAGAKAGA (Motif 36)

G T A C C G T A A C T G C G T A A C G T C G T A A C T G C G T A A C G T C T G A A C T G T C G A
Reverse Opposite:
A G C T A G T C A G C T G T C A A C G T A G T C A C G T C G T A A C G T A G T C C G A T C A G T
p-value:1e-2
log p-value:-6.291e+00
Information Content per bp:1.803
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.06%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets164.1 +/- 37.0bp
Average Position of motif in Background76.3 +/- 55.8bp
Strand Bias (log2 ratio + to - strand density)3.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX2/MA1113.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:NAGATAGAKAGA
GTGATTGACAGG
 G T A C C G T A A C T G C G T A A C G T C G T A A C T G C G T A A C G T C T G A A C T G T C G A
T C A G C G A T C A T G C T G A A C G T C A G T A C T G C T G A A G T C C T G A A T C G T A C G

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:NAGATAGAKAGA
-TGATKGATGR-
 G T A C C G T A A C T G C G T A A C G T C G T A A C T G C G T A A C G T C T G A A C T G T C G A
A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G A C G T

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:NAGATAGAKAGA----
-AGATGKDGAGATAAG
 G T A C C G T A A C T G C G T A A C G T C G T A A C T G C G T A A C G T C T G A A C T G T C G A A C G T A C G T A C G T A C G T
A C G T C G T A A C T G G T C A A C G T A T C G C A G T C T A G T C A G C G T A A C T G C G T A A C G T C G T A C T G A T A C G

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:NAGATAGAKAGA
-AGATAASR---
 G T A C C G T A A C T G C G T A A C G T C G T A A C T G C G T A A C G T C T G A A C T G T C G A
A C G T G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A A C G T A C G T A C G T

TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:NAGATAGAKAGA
-AGATAAGANN-
 G T A C C G T A A C T G C G T A A C G T C G T A A C T G C G T A A C G T C T G A A C T G T C G A
A C G T C G T A A C T G C G T A A C G T C G T A C T G A T C A G T G C A A G C T T G A C A C G T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:NAGATAGAKAGA
RTGATTKATRGN
 G T A C C G T A A C T G C G T A A C G T C G T A A C T G C G T A A C G T C T G A A C T G T C G A
C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C

GATA5/MA0766.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:NAGATAGAKAGA
-AGATAAGA---
 G T A C C G T A A C T G C G T A A C G T C G T A A C T G C G T A A C G T C T G A A C T G T C G A
A C G T G C T A A C T G C T G A A C G T G C T A C T G A T A C G T C G A A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:NAGATAGAKAGA
NTGATTGACAGN
 G T A C C G T A A C T G C G T A A C G T C G T A A C T G C G T A A C G T C T G A A C T G T C G A
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Gata1/MA0035.3/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-NAGATAGAKAGA
ANAGATAAGAA--
 A C G T G T A C C G T A A C T G C G T A A C G T C G T A A C T G C G T A A C G T C T G A A C T G T C G A
C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:NAGATAGAKAGA
ATGATKGATGRC
 G T A C C G T A A C T G C G T A A C G T C G T A A C T G C G T A A C G T C T G A A C T G T C G A
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C