Information for 3-BCAAAGGTCA (Motif 2)

A G C T T G A C T C G A C T G A T C G A C T A G C A T G A G C T A G T C C T G A
Reverse Opposite:
G A C T T C A G T C G A G T A C G A T C A G C T G A C T A G C T A C T G T C G A
p-value:1e-50
log p-value:-1.161e+02
Information Content per bp:1.648
Number of Target Sequences with motif268.0
Percentage of Target Sequences with motif25.09%
Number of Background Sequences with motif4364.9
Percentage of Background Sequences with motif9.30%
Average Position of motif in Targets102.3 +/- 53.7bp
Average Position of motif in Background100.2 +/- 62.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.94
Offset:1
Orientation:forward strand
Alignment:BCAAAGGTCA-
-CAAAGGTCAG
 A G C T T G A C T C G A C T G A T C G A C T A G C A T G A G C T A G T C C T G A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PB0053.1_Rara_1/Jaspar

Match Rank:2
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--BCAAAGGTCA----
TCTCAAAGGTCACCTG
 A C G T A C G T A G C T T G A C T C G A C T G A T C G A C T A G C A T G A G C T A G T C C T G A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--BCAAAGGTCA----
TCTCAAAGGTCACGAG
 A C G T A C G T A G C T T G A C T C G A C T G A T C G A C T A G C A T G A G C T A G T C C T G A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.88
Offset:-5
Orientation:forward strand
Alignment:-----BCAAAGGTCA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A G C T T G A C T C G A C T G A T C G A C T A G C A T G A G C T A G T C C T G A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:BCAAAGGTCA-
-CAAAGKTCAA
 A G C T T G A C T C G A C T G A T C G A C T A G C A T G A G C T A G T C C T G A A C G T
A C G T G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A

NR4A1/MA1112.1/Jaspar

Match Rank:6
Score:0.87
Offset:1
Orientation:forward strand
Alignment:BCAAAGGTCA-
-AAAAGGTCAC
 A G C T T G A C T C G A C T G A T C G A C T A G C A T G A G C T A G T C C T G A A C G T
A C G T C G T A C T G A C G T A G T C A A T C G T C A G A G C T G T A C C T G A G T A C

NR2F2/MA1111.1/Jaspar

Match Rank:7
Score:0.87
Offset:1
Orientation:forward strand
Alignment:BCAAAGGTCA--
-CAAAGGTCAAA
 A G C T T G A C T C G A C T G A T C G A C T A G C A T G A G C T A G T C C T G A A C G T A C G T
A C G T G A T C G T C A C G T A C T G A C A T G C T A G A C G T G A T C C T G A C T G A C T G A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:8
Score:0.86
Offset:-6
Orientation:forward strand
Alignment:------BCAAAGGTCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T T G A C T C G A C T G A T C G A C T A G C A T G A G C T A G T C C T G A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--BCAAAGGTCA
GKBCARAGGTCA
 A C G T A C G T A G C T T G A C T C G A C T G A T C G A C T A G C A T G A G C T A G T C C T G A
T A C G A C T G A G C T G T A C C G T A T C G A C T G A A C T G C A T G A C G T A G T C C G T A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:10
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--BCAAAGGTCA
ANGNAAAGGTCA
 A C G T A C G T A G C T T G A C T C G A C T G A T C G A C T A G C A T G A G C T A G T C C T G A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A