Information for 20-GGTSTCGTAAAM (Motif 20)

A C T G A T C G A C G T A T G C A C G T A G T C A C T G G A C T C T G A C G T A C G T A G T A C
Reverse Opposite:
A C T G A C G T A C G T A G C T C G T A A G T C C T A G C G T A A T C G C G T A A T G C G T A C
p-value:1e-9
log p-value:-2.193e+01
Information Content per bp:1.838
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif11.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets80.1 +/- 25.9bp
Average Position of motif in Background88.9 +/- 48.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.75
Offset:2
Orientation:forward strand
Alignment:GGTSTCGTAAAM-
--GCTCGTAAAAA
 A C T G A T C G A C G T A T G C A C G T A G T C A C T G G A C T C T G A C G T A C G T A G T A C A C G T
A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

HOXD11/MA0908.1/Jaspar

Match Rank:2
Score:0.75
Offset:3
Orientation:forward strand
Alignment:GGTSTCGTAAAM-
---GTCGTAAAAA
 A C T G A T C G A C G T A T G C A C G T A G T C A C T G G A C T C T G A C G T A C G T A G T A C A C G T
A C G T A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

HOXC11/MA0651.1/Jaspar

Match Rank:3
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GGTSTCGTAAAM-
--GGTCGTAAAAT
 A C T G A T C G A C G T A T G C A C G T A G T C A C T G G A C T C T G A C G T A C G T A G T A C A C G T
A C G T A C G T C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

HOXC12/MA0906.1/Jaspar

Match Rank:4
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GGTSTCGTAAAM-
--GGTCGTAAAAA
 A C T G A T C G A C G T A T G C A C G T A G T C A C T G G A C T C T G A C G T A C G T A G T A C A C G T
A C G T A C G T C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GGTSTCGTAAAM---
AAACCTCGTAAAATTT
 A C G T A C T G A T C G A C G T A T G C A C G T A G T C A C T G G A C T C T G A C G T A C G T A G T A C A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

Hoxa11/MA0911.1/Jaspar

Match Rank:6
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GGTSTCGTAAAM--
--GGTCGTAAAATT
 A C T G A T C G A C G T A T G C A C G T A G T C A C T G G A C T C T G A C G T A C G T A G T A C A C G T A C G T
A C G T A C G T C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

HOXD12/MA0873.1/Jaspar

Match Rank:7
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GGTSTCGTAAAM-
--AGTCGTAAAAA
 A C T G A T C G A C G T A T G C A C G T A G T C A C T G G A C T C T G A C G T A C G T A G T A C A C G T
A C G T A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.71
Offset:3
Orientation:forward strand
Alignment:GGTSTCGTAAAM-
---GTCGTAAAAT
 A C T G A T C G A C G T A T G C A C G T A G T C A C T G G A C T C T G A C G T A C G T A G T A C A C G T
A C G T A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PH0065.1_Hoxc10/Jaspar

Match Rank:9
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GGTSTCGTAAAM---
TAAAGTCGTAAAACGT
 A C G T A C T G A T C G A C G T A T G C A C G T A G T C A C T G G A C T C T G A C G T A C G T A G T A C A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:10
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GGTSTCGTAAAM----
CAAGGTCGTAAAATCTT
 A C G T A C T G A T C G A C G T A T G C A C G T A G T C A C T G G A C T C T G A C G T A C G T A G T A C A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T