Information for 5-RTCTCWCA (Motif 13)

T C A G A G C T A T G C A C G T A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G C G A T A C T G C G T A A T C G C T G A A G T C
p-value:1e-28
log p-value:-6.552e+01
Information Content per bp:1.823
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif6.84%
Number of Background Sequences with motif395.7
Percentage of Background Sequences with motif0.81%
Average Position of motif in Targets93.8 +/- 54.6bp
Average Position of motif in Background102.5 +/- 63.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.55
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MGA/MA0801.1/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:RTCTCWCA---
---TCACACCT
 T C A G A G C T A T G C A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-RTCTCWCA---
TGTCTGDCACCT
 A C G T T C A G A G C T A T G C A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:RTCTCWCA---
-TTTCACACCT
 T C A G A G C T A T G C A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T G C A T G A C T T A G C C G T A G A T C C G T A T G A C G A T C G A C T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:RTCTCWCA---
-KTTCACACCT
 T C A G A G C T A T G C A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T

TBX1/MA0805.1/Jaspar

Match Rank:5
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:RTCTCWCA---
---TCACACCT
 T C A G A G C T A T G C A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--RTCTCWCA---
CTGTCTGTCACCT
 A C G T A C G T T C A G A G C T A T G C A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

EOMES/MA0800.1/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-RTCTCWCA----
NTTTTCACACCTT
 A C G T T C A G A G C T A T G C A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T

TBX15/MA0803.1/Jaspar

Match Rank:8
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:RTCTCWCA---
---TCACACCT
 T C A G A G C T A T G C A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T

PB0013.1_Eomes_1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--RTCTCWCA-------
NNTTTTCACACCTTNNN
 A C G T A C G T T C A G A G C T A T G C A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

TBR1/MA0802.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:RTCTCWCA---
-TTTCACACCT
 T C A G A G C T A T G C A C G T A G T C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T