Information for 16-AGAGGCGT (Motif 23)

C G T A A C T G C G T A A T C G A C T G A G T C A C T G C G A T
Reverse Opposite:
C G T A A G T C A C T G A G T C A T G C A C G T A G T C A C G T
p-value:1e-8
log p-value:-2.009e+01
Information Content per bp:1.923
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.79%
Number of Background Sequences with motif249.5
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets84.9 +/- 64.1bp
Average Position of motif in Background86.2 +/- 67.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0180.1_Sp4_2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGAGGCGT------
CAAAGGCGTGGCCAG
 A C G T C G T A A C T G C G T A A T C G A C T G A G T C A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

KLF13/MA0657.1/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----AGAGGCGT-----
CAAAAAGGGGCGTGGCAT
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A T C G A C T G A G T C A C T G C G A T A C G T A C G T A C G T A C G T A C G T
G T A C G T C A G T C A G T C A C T G A C T G A C A T G C T A G A C T G C T A G G A T C T A C G A G C T C A T G C A T G G A T C G T C A G A C T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGAGGCGT-
---TGCGTG
 C G T A A C T G C G T A A T C G A C T G A G T C A C T G C G A T A C G T
A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G

PB0117.1_Eomes_2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGAGGCGT------
GCGGAGGTGTCGCCTC
 A C G T A C G T C G T A A C T G C G T A A T C G A C T G A G T C A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGAGGCGT
HAWGRGGCCM
 A C G T A C G T C G T A A C T G C G T A A T C G A C T G A G T C A C T G C G A T
G A C T T C G A C G A T T A C G C T A G T A C G A C T G A T G C G T A C G T A C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGAGGCGT--
--AGGCCTNG
 C G T A A C T G C G T A A T C G A C T G A G T C A C T G C G A T A C G T A C G T
A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

Hes1/MA1099.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGAGGCGT---
-NNCGCGTGNN
 C G T A A C T G C G T A A T C G A C T G A G T C A C T G C G A T A C G T A C G T A C G T
A C G T C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C

KLF14/MA0740.1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGAGGCGT----
AAGGGGGCGTGGCC
 A C G T A C G T C G T A A C T G C G T A A T C G A C T G A G T C A C T G C G A T A C G T A C G T A C G T A C G T
C T G A C T G A C T A G C A T G T C A G T C A G A T C G A G T C C A T G A C G T T C A G C A T G A G T C G T A C

TBX5/MA0807.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGAGGCGT--
--AGGTGTGA
 C G T A A C T G C G T A A T C G A C T G A G T C A C T G C G A T A C G T A C G T
A C G T A C G T C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGAGGCGT
CCAGACRSVB
 A C G T A C G T C G T A A C T G C G T A A T C G A C T G A G T C A C T G C G A T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C