Information for 17-CAGTGTAC (Motif 24)

A G T C C G T A C T A G A G C T A C T G A C G T C T G A A G T C
Reverse Opposite:
A C T G A G C T C G T A A G T C C T G A A G T C A C G T A C T G
p-value:1e-8
log p-value:-1.976e+01
Information Content per bp:1.927
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif3.21%
Number of Background Sequences with motif338.5
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets114.8 +/- 42.7bp
Average Position of motif in Background100.3 +/- 70.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX13/MA1120.1/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CAGTGTAC
NNCCATTGTNN
 A C G T A C G T A C G T A G T C C G T A C T A G A G C T A C T G A C G T C T G A A G T C
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.65
Offset:-7
Orientation:reverse strand
Alignment:-------CAGTGTAC--
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T A G A G C T A C T G A C G T C T G A A G T C A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CAGTGTAC----
--CTGTTCCTGG
 A G T C C G T A C T A G A G C T A C T G A C G T C T G A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CAGTGTAC-----
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A C G T A G T C C G T A C T A G A G C T A C T G A C G T C T G A A G T C A C G T A C G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CAGTGTAC-
CCWTTGTYYB
 A C G T A G T C C G T A C T A G A G C T A C T G A C G T C T G A A G T C A C G T
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CAGTGTAC-
CCATTGTTYB
 A C G T A G T C C G T A C T A G A G C T A C T G A C G T C T G A A G T C A C G T
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAGTGTAC
CTCATTGTC-
 A C G T A C G T A G T C C G T A C T A G A G C T A C T G A C G T C T G A A G T C
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAGTGTAC
NCCATTGTTC
 A C G T A C G T A G T C C G T A C T A G A G C T A C T G A C G T C T G A A G T C
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CAGTGTAC-------
TTCNAAGTACTTNNNNN
 A C G T A C G T A G T C C G T A C T A G A G C T A C T G A C G T C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CAGTGTAC
NCCATTGTTY
 A C G T A C G T A G T C C G T A C T A G A G C T A C T G A C G T C T G A A G T C
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T