Information for 3-CRTTWACATRCC (Motif 3)

A G T C C T G A A C G T A C G T C G T A C G T A A G T C C G T A A C G T C T G A A G T C A G T C
Reverse Opposite:
A C T G A C T G A G C T C G T A A C G T A C T G C G A T C G A T C G T A C G T A A G C T A C T G
p-value:1e-96
log p-value:-2.212e+02
Information Content per bp:1.900
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif5.87%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets117.2 +/- 48.5bp
Average Position of motif in Background135.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CRTTWACATRCC
BTVATTWGCATA--
 A C G T A C G T A G T C C T G A A C G T A C G T C G T A C G T A A G T C C G T A A C G T C T G A A G T C A G T C
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CRTTWACATRCC
-ATTTGCATA--
 A G T C C T G A A C G T A C G T C G T A C G T A A G T C C G T A A C G T C T G A A G T C A G T C
A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CRTTWACATRCC
CTCATTTGCATW--
 A C G T A C G T A G T C C T G A A C G T A C G T C G T A C G T A A G T C C G T A A C G T C T G A A G T C A G T C
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CRTTWACATRCC
-ATTTGCATA--
 A G T C C T G A A C G T A C G T C G T A C G T A A G T C C G T A A C G T C T G A A G T C A G T C
A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T A C G T

TEAD3/MA0808.1/Jaspar

Match Rank:5
Score:0.68
Offset:5
Orientation:forward strand
Alignment:CRTTWACATRCC-
-----ACATTCCA
 A G T C C T G A A C G T A C G T C G T A C G T A A G T C C G T A A C G T C T G A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T G A C C G T A A C G T C G A T A G T C A G T C C G T A

POU3F1/MA0786.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CRTTWACATRCC
TAATTTGCATAA-
 A C G T A G T C C T G A A C G T A C G T C G T A C G T A A G T C C G T A A C G T C T G A A G T C A G T C
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A A C G T

TEAD1/MA0090.2/Jaspar

Match Rank:7
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CRTTWACATRCC--
----CACATTCCAT
 A G T C C T G A A C G T A C G T C G T A C G T A A G T C C G T A A C G T C T G A A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A T C T C G A T G A C G T C A A G C T G C A T G T A C A G T C C G T A G A C T

POU3F2/MA0787.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CRTTWACATRCC
TAATTTGCATAA-
 A C G T A G T C C T G A A C G T A C G T C G T A C G T A A G T C C G T A A C G T C T G A A G T C A G T C
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A A C G T

TEAD2/MA1121.1/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CRTTWACATRCC----
---TCACATTCCAGCC
 A G T C C T G A A C G T A C G T C G T A C G T A A G T C C G T A A C G T C T G A A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T G A T C T C G A T G A C C T G A A G C T C G A T A G T C G A T C G C T A C A T G A T G C T A G C

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CRTTWACATRCC-
TNTAATTTGCATACNA
 A C G T A C G T A C G T A G T C C T G A A C G T A C G T C G T A C G T A A G T C C G T A A C G T C T G A A G T C A G T C A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A