Information for 24-TTAGGGTTAG (Motif 31)

A C G T A C G T C G T A A C T G A C T G T A C G A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A A T G C A G T C A G T C A C G T C G T A C G T A
p-value:1e-1
log p-value:-4.415e+00
Information Content per bp:1.964
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif32.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets90.3 +/- 49.8bp
Average Position of motif in Background76.0 +/- 71.7bp
Strand Bias (log2 ratio + to - strand density)3.8
Multiplicity (# of sites on avg that occur together)5.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:TTAGGGTTAG-
---GGATTAGC
 A C G T A C G T C G T A A C T G A C T G T A C G A C G T A C G T C G T A A C T G A C G T
A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

PITX3/MA0714.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TTAGGGTTAG-
--GGGATTANN
 A C G T A C G T C G T A A C T G A C T G T A C G A C G T A C G T C G T A A C T G A C G T
A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

PSE(SNAPc)/K562-mStart-Seq/Homer

Match Rank:3
Score:0.63
Offset:-8
Orientation:reverse strand
Alignment:--------TTAGGGTTAG--
CTTTTHRSTTAKGGTGABTW
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G T A C G A C G T A C G T C G T A A C T G A C G T A C G T
G A T C G C A T C A G T C G A T G C A T G C T A T C A G T A G C G C A T A G C T C T G A A C G T C T A G C T A G A G C T C T A G C T G A A T G C G A C T G C A T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TTAGGGTTAG
--RGGATTAR
 A C G T A C G T C G T A A C T G A C T G T A C G A C G T A C G T C G T A A C T G
A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTAGGGTTAG-
-VRGGATTARN
 A C G T A C G T C G T A A C T G A C T G T A C G A C G T A C G T C G T A A C T G A C G T
A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

OTX2/MA0712.1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TTAGGGTTAG
--NGGATTAA
 A C G T A C G T C G T A A C T G A C T G T A C G A C G T A C G T C G T A A C T G
A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTAGGGTTAG
-NGGGATTA-
 A C G T A C G T C G T A A C T G A C T G T A C G A C G T A C G T C G T A A C T G
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TTAGGGTTAG
--GGGATTAA
 A C G T A C G T C G T A A C T G A C T G T A C G A C G T A C G T C G T A A C T G
A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

GSC2/MA0891.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTAGGGTTAG-
-GNGGATTAGN
 A C G T A C G T C G T A A C T G A C T G T A C G A C G T A C G T C G T A A C T G A C G T
A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

Crx/MA0467.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTAGGGTTAG
AAGAGGATTAG
 A C G T A C G T A C G T C G T A A C T G A C T G T A C G A C G T A C G T C G T A A C T G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G