Information for 6-GAGCCTCATTAT (Motif 4)

C T A G C G T A C T A G A G T C A G T C A C G T G T A C C G T A A G C T A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A C T G A A C G T A C T G C G T A A C T G A C T G A G T C A C G T A G T C
p-value:1e-69
log p-value:-1.602e+02
Information Content per bp:1.960
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif4.47%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets102.3 +/- 58.7bp
Average Position of motif in Background142.4 +/- 46.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.58
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0152.1_Pou6f1_2/Jaspar

Match Rank:1
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-GAGCCTCATTAT----
GCAACCTCATTATNNNN
 A C G T C T A G C G T A C T A G A G T C A G T C A C G T G T A C C G T A A G C T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GAGCCTCATTAT----
NNNACCTCATTATCNTN
 A C G T C T A G C G T A C T A G A G T C A G T C A C G T G T A C C G T A A G C T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

POU6F2/MA0793.1/Jaspar

Match Rank:3
Score:0.74
Offset:2
Orientation:forward strand
Alignment:GAGCCTCATTAT
--AGCTCATTAT
 C T A G C G T A C T A G A G T C A G T C A C G T G T A C C G T A A G C T A C G T C G T A A C G T
A C G T A C G T C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T

Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAGCCTCATTAT
KGGCCYCWTD--
 C T A G C G T A C T A G A G T C A G T C A C G T G T A C C G T A A G C T A C G T C G T A A C G T
C A T G C A T G T A C G G T A C A T G C G A T C A T G C G C T A A G C T C T G A A C G T A C G T

GSX1/MA0892.1/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GAGCCTCATTAT-
---CCTAATTAAA
 C T A G C G T A C T A G A G T C A G T C A C G T G T A C C G T A A G C T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T G T A C A T G C G A C T G T C A T C G A G C A T G A C T C G T A T C G A G C T A

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:6
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GAGCCTCATTAT
---NCTAATTA-
 C T A G C G T A C T A G A G T C A G T C A C G T G T A C C G T A A G C T A C G T C G T A A C G T
A C G T A C G T A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T

NOTO/MA0710.1/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GAGCCTCATTAT-
---GCTAATTAGC
 C T A G C G T A C T A G A G T C A G T C A C G T G T A C C G T A A G C T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T T A C G G A T C G C A T G T C A C G T A A C G T C A G T C T G A T C A G A T G C

LBX1/MA0618.1/Jaspar

Match Rank:8
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GAGCCTCATTAT
----CTAATTAA
 C T A G C G T A C T A G A G T C A G T C A C G T G T A C C G T A A G C T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:9
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GAGCCTCATTAT-
-----YCATTAMC
 C T A G C G T A C T A G A G T C A G T C A C G T G T A C C G T A A G C T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C

MEOX1/MA0661.1/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GAGCCTCATTAT-
---GCTAATTAAC
 C T A G C G T A C T A G A G T C A G T C A C G T G T A C C G T A A G C T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T T C A G T A G C G A C T T G C A C G T A G A C T A C G T C T G A G T C A T A G C