Information for 18-GAGACATGCAAA (Motif 17)

A C T G C G T A C T A G C G T A A G T C C G T A A C G T A C T G A G T C C G T A C T G A C G T A
Reverse Opposite:
A C G T A G C T A C G T A C T G A G T C C G T A A C G T C T A G A C G T A G T C C G A T A G T C
p-value:1e-22
log p-value:-5.088e+01
Information Content per bp:1.963
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif0.27%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets104.6 +/- 49.6bp
Average Position of motif in Background164.9 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU5F1/MA1115.1/Jaspar

Match Rank:1
Score:0.77
Offset:3
Orientation:forward strand
Alignment:GAGACATGCAAA--
---ATATGCAAATT
 A C T G C G T A C T A G C G T A A G T C C G T A A C G T A C T G A G T C C G T A C T G A C G T A A C G T A C G T
A C G T A C G T A C G T C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:GAGACATGCAAA----
---ATATGCAAATNNN
 A C T G C G T A C T A G C G T A A G T C C G T A A C G T A C T G A G T C C G T A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.74
Offset:3
Orientation:forward strand
Alignment:GAGACATGCAAA-
---ATATGCAAAT
 A C T G C G T A C T A G C G T A A G T C C G T A A C G T A C T G A G T C C G T A C T G A C G T A A C G T
A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:GAGACATGCAAA-
---TTATGCAAAT
 A C T G C G T A C T A G C G T A A G T C C G T A A C G T A C T G A G T C C G T A C T G A C G T A A C G T
A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.68
Offset:4
Orientation:forward strand
Alignment:GAGACATGCAAA----
----TATGCWAATBAV
 A C T G C G T A C T A G C G T A A G T C C G T A A C G T A C T G A G T C C G T A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:6
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GAGACATGCAAA--
----TATGCAAATC
 A C T G C G T A C T A G C G T A A G T C C G T A A C G T A C T G A G T C C G T A C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C G T A C A G T A C T G A G T C C G T A C G T A C G T A C A G T T G A C

POU5F1B/MA0792.1/Jaspar

Match Rank:7
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GAGACATGCAAA-
----TATGCAAAT
 A C T G C G T A C T A G C G T A A G T C C G T A A C G T A C T G A G T C C G T A C T G A C G T A A C G T
A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.65
Offset:4
Orientation:forward strand
Alignment:GAGACATGCAAA----
----WATGCAAATGAG
 A C T G C G T A C T A G C G T A A G T C C G T A A C G T A C T G A G T C C G T A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

POU2F1/MA0785.1/Jaspar

Match Rank:9
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GAGACATGCAAA--
--AATATGCAAATT
 A C T G C G T A C T A G C G T A A G T C C G T A A C G T A C T G A G T C C G T A C T G A C G T A A C G T A C G T
A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

POU3F4/MA0789.1/Jaspar

Match Rank:10
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GAGACATGCAAA-
----TATGCAAAT
 A C T G C G T A C T A G C G T A A G T C C G T A A C G T A C T G A G T C C G T A C T G A C G T A A C G T
A C G T A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T