Information for 20-GTTGCCTG (Motif 23)

A C T G A G C T A C G T A C T G A G T C A G T C C A G T A C T G
Reverse Opposite:
A G T C G T C A A C T G C T A G A G T C C G T A C T G A A G T C
p-value:1e-12
log p-value:-2.829e+01
Information Content per bp:1.886
Number of Target Sequences with motif473.0
Percentage of Target Sequences with motif7.19%
Number of Background Sequences with motif2209.0
Percentage of Background Sequences with motif5.13%
Average Position of motif in Targets101.7 +/- 56.0bp
Average Position of motif in Background101.0 +/- 59.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCCTG
NNACTTGCCTT
 A C G T A C G T A C G T A C T G A G C T A C G T A C T G A G T C A G T C C A G T A C T G
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCCTG--
CTGTTGCTAGGS
 A C G T A C G T A C T G A G C T A C G T A C T G A G T C A G T C C A G T A C T G A C G T A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTTGCCTG--
ATTTCCTGTN
 A C T G A G C T A C G T A C T G A G T C A G T C C A G T A C T G A C G T A C G T
C T G A A G C T A C G T A C G T A G T C A G T C A C G T A C T G G A C T A C G T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GTTGCCTG--
--TGCCAGCB
 A C T G A G C T A C G T A C T G A G T C A G T C C A G T A C T G A C G T A C G T
A C G T A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GTTGCCTG---
-TTGCGTGCVA
 A C T G A G C T A C G T A C T G A G T C A G T C C A G T A C T G A C G T A C G T A C G T
A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCCTG------
KGTTGCTAGGMAACA
 A C G T A C T G A G C T A C G T A C T G A G T C A G T C C A G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GTTGCCTG-
-TWGTCTGV
 A C T G A G C T A C G T A C T G A G T C A G T C C A G T A C T G A C G T
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GTTGCCTG-
-TTGCCAAG
 A C T G A G C T A C G T A C T G A G T C A G T C C A G T A C T G A C G T
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Rfx1/MA0509.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTTGCCTG------
GTTGCCATGGNAAC
 A C T G A G C T A C G T A C T G A G T C A G T C C A G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTTGCCTG--
ATTTCCTGTN
 A C T G A G C T A C G T A C T G A G T C A G T C C A G T A C T G A C G T A C G T
T C G A A G C T A C G T A C G T A G T C A G T C A C G T A T C G G A C T A T C G