Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 6582)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 43080)	% of Background Sequences with Motif
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-510	-1.176e+03	0.0000	1587.0	24.11%	2515.9	5.84%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-497	-1.147e+03	0.0000	1670.0	25.37%	2850.7	6.62%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-491	-1.131e+03	0.0000	2070.0	31.45%	4350.4	10.11%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-480	-1.107e+03	0.0000	1322.0	20.09%	1829.2	4.25%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-469	-1.081e+03	0.0000	1240.0	18.84%	1636.4	3.80%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-418	-9.638e+02	0.0000	2318.0	35.22%	5919.9	13.75%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-297	-6.844e+02	0.0000	525.0	7.98%	401.9	0.93%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-165	-3.810e+02	0.0000	989.0	15.03%	2450.1	5.69%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-163	-3.772e+02	0.0000	2403.0	36.51%	9346.4	21.71%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-149	-3.451e+02	0.0000	554.0	8.42%	961.0	2.23%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-146	-3.363e+02	0.0000	1307.0	19.86%	4036.6	9.38%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-138	-3.187e+02	0.0000	2525.0	38.36%	10497.5	24.39%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-124	-2.869e+02	0.0000	1936.0	29.41%	7514.5	17.46%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-96	-2.218e+02	0.0000	1909.0	29.00%	7922.1	18.40%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-93	-2.150e+02	0.0000	986.0	14.98%	3222.1	7.49%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-91	-2.097e+02	0.0000	2646.0	40.20%	12277.8	28.52%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-64	-1.474e+02	0.0000	898.0	13.64%	3249.2	7.55%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-46	-1.067e+02	0.0000	1018.0	15.47%	4220.8	9.81%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-38	-8.899e+01	0.0000	104.0	1.58%	135.0	0.31%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-35	-8.157e+01	0.0000	256.0	3.89%	689.5	1.60%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-30	-7.131e+01	0.0000	90.0	1.37%	126.7	0.29%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-27	-6.259e+01	0.0000	203.0	3.08%	557.2	1.29%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-25	-5.865e+01	0.0000	84.0	1.28%	133.4	0.31%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-22	-5.132e+01	0.0000	730.0	11.09%	3303.0	7.67%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-21	-5.029e+01	0.0000	476.0	7.23%	1952.0	4.53%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-20	-4.686e+01	0.0000	183.0	2.78%	551.9	1.28%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-20	-4.618e+01	0.0000	200.0	3.04%	630.4	1.46%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-19	-4.577e+01	0.0000	82.0	1.25%	157.8	0.37%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-18	-4.360e+01	0.0000	615.0	9.34%	2774.2	6.45%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-18	-4.218e+01	0.0000	362.0	5.50%	1445.8	3.36%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-18	-4.159e+01	0.0000	355.0	5.39%	1415.9	3.29%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-17	-4.129e+01	0.0000	377.0	5.73%	1531.8	3.56%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-17	-4.040e+01	0.0000	248.0	3.77%	893.9	2.08%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-16	-3.896e+01	0.0000	410.0	6.23%	1728.5	4.02%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-16	-3.854e+01	0.0000	357.0	5.42%	1457.0	3.38%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-15	-3.635e+01	0.0000	416.0	6.32%	1790.0	4.16%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-15	-3.458e+01	0.0000	1354.0	20.57%	7232.6	16.80%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-14	-3.433e+01	0.0000	311.0	4.73%	1262.4	2.93%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-14	-3.424e+01	0.0000	287.0	4.36%	1140.2	2.65%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-14	-3.390e+01	0.0000	408.0	6.20%	1777.8	4.13%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-14	-3.292e+01	0.0000	659.0	10.01%	3180.3	7.39%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-14	-3.256e+01	0.0000	615.0	9.34%	2937.2	6.82%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-14	-3.224e+01	0.0000	1147.0	17.43%	6044.7	14.04%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-13	-3.186e+01	0.0000	1085.0	16.48%	5683.1	13.20%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-13	-3.119e+01	0.0000	654.0	9.94%	3181.2	7.39%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-12	-2.956e+01	0.0000	456.0	6.93%	2096.6	4.87%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-12	-2.923e+01	0.0000	49.0	0.74%	91.3	0.21%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-12	-2.777e+01	0.0000	442.0	6.72%	2045.0	4.75%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-11	-2.757e+01	0.0000	1716.0	26.07%	9637.3	22.39%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-11	-2.648e+01	0.0000	502.0	7.63%	2400.6	5.58%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-11	-2.629e+01	0.0000	459.0	6.97%	2162.8	5.02%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-11	-2.544e+01	0.0000	1177.0	17.88%	6393.3	14.85%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-10	-2.511e+01	0.0000	361.0	5.48%	1638.7	3.81%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-10	-2.476e+01	0.0000	988.0	15.01%	5272.5	12.25%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-10	-2.385e+01	0.0000	1062.0	16.13%	5740.7	13.34%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-10	-2.334e+01	0.0000	796.0	12.09%	4163.9	9.67%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-9	-2.240e+01	0.0000	218.0	3.31%	907.4	2.11%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-9	-2.153e+01	0.0000	488.0	7.41%	2407.6	5.59%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-9	-2.093e+01	0.0000	1131.0	17.18%	6240.3	14.50%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-8	-2.059e+01	0.0000	707.0	10.74%	3701.4	8.60%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-8	-2.049e+01	0.0000	1263.0	19.19%	7061.7	16.41%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-8	-2.002e+01	0.0000	370.0	5.62%	1765.3	4.10%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-7	-1.773e+01	0.0000	2043.0	31.04%	12036.2	27.96%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-7	-1.726e+01	0.0000	509.0	7.73%	2614.5	6.07%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-7	-1.666e+01	0.0000	676.0	10.27%	3614.5	8.40%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-7	-1.660e+01	0.0000	611.0	9.28%	3229.4	7.50%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-6	-1.577e+01	0.0000	1212.0	18.41%	6905.6	16.04%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-6	-1.569e+01	0.0000	810.0	12.31%	4446.5	10.33%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-6	-1.564e+01	0.0000	559.0	8.49%	2945.1	6.84%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-6	-1.564e+01	0.0000	98.0	1.49%	365.0	0.85%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-6	-1.563e+01	0.0000	832.0	12.64%	4581.0	10.64%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-6	-1.550e+01	0.0000	478.0	7.26%	2472.2	5.74%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-6	-1.513e+01	0.0000	338.0	5.14%	1670.1	3.88%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-6	-1.502e+01	0.0000	625.0	9.50%	3353.7	7.79%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-6	-1.500e+01	0.0000	92.0	1.40%	340.6	0.79%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-6	-1.492e+01	0.0000	175.0	2.66%	768.2	1.78%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-6	-1.459e+01	0.0000	604.0	9.18%	3239.3	7.53%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-5	-1.366e+01	0.0000	1108.0	16.83%	6339.3	14.73%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-5	-1.319e+01	0.0000	880.0	13.37%	4952.5	11.51%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-5	-1.308e+01	0.0000	111.0	1.69%	453.3	1.05%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-5	-1.302e+01	0.0000	850.0	12.91%	4774.2	11.09%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-5	-1.296e+01	0.0000	240.0	3.65%	1154.3	2.68%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-5	-1.294e+01	0.0000	1053.0	16.00%	6026.5	14.00%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-5	-1.284e+01	0.0000	519.0	7.89%	2780.0	6.46%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-5	-1.261e+01	0.0000	260.0	3.95%	1273.9	2.96%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-5	-1.260e+01	0.0000	1119.0	17.00%	6448.2	14.98%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-5	-1.240e+01	0.0000	1268.0	19.26%	7384.9	17.16%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-5	-1.204e+01	0.0000	1416.0	21.51%	8327.4	19.35%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-5	-1.201e+01	0.0000	2205.0	33.50%	13336.4	30.98%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-5	-1.173e+01	0.0000	594.0	9.02%	3260.2	7.57%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-5	-1.163e+01	0.0000	774.0	11.76%	4357.0	10.12%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-4	-1.124e+01	0.0001	2400.0	36.46%	14630.1	33.99%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-4	-1.122e+01	0.0001	285.0	4.33%	1443.7	3.35%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-4	-1.118e+01	0.0001	174.0	2.64%	815.2	1.89%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-4	-1.112e+01	0.0001	617.0	9.37%	3418.0	7.94%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-4	-1.042e+01	0.0001	370.0	5.62%	1958.0	4.55%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-4	-1.034e+01	0.0001	436.0	6.62%	2352.8	5.47%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-4	-1.031e+01	0.0001	858.0	13.04%	4922.5	11.44%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-4	-1.009e+01	0.0002	61.0	0.93%	229.6	0.53%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-4	-1.000e+01	0.0002	1092.0	16.59%	6389.8	14.84%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-4	-9.945e+00	0.0002	474.0	7.20%	2591.7	6.02%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-4	-9.732e+00	0.0002	67.0	1.02%	262.6	0.61%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-4	-9.371e+00	0.0004	235.0	3.57%	1193.5	2.77%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-4	-9.364e+00	0.0004	284.0	4.31%	1479.0	3.44%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-4	-9.363e+00	0.0004	73.0	1.11%	296.1	0.69%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-4	-9.325e+00	0.0004	666.0	10.12%	3778.2	8.78%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-3	-8.833e+00	0.0006	1820.0	27.65%	11053.2	25.68%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-3	-8.482e+00	0.0008	508.0	7.72%	2843.8	6.61%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-3	-8.433e+00	0.0009	173.0	2.63%	856.3	1.99%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-3	-8.378e+00	0.0009	1590.0	24.16%	9614.0	22.33%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-3	-8.133e+00	0.0011	296.0	4.50%	1579.6	3.67%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-3	-7.983e+00	0.0013	35.0	0.53%	120.5	0.28%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-3	-7.768e+00	0.0016	794.0	12.06%	4632.1	10.76%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-3	-7.748e+00	0.0016	511.0	7.76%	2887.3	6.71%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-3	-7.675e+00	0.0017	756.0	11.49%	4400.8	10.22%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-3	-7.412e+00	0.0022	1296.0	19.69%	7804.6	18.13%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-3	-7.334e+00	0.0024	180.0	2.73%	918.2	2.13%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-3	-7.267e+00	0.0025	78.0	1.19%	346.1	0.80%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-3	-7.267e+00	0.0025	78.0	1.19%	346.1	0.80%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-3	-7.143e+00	0.0028	936.0	14.22%	5549.2	12.89%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-3	-7.127e+00	0.0028	81.0	1.23%	364.5	0.85%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-2	-6.860e+00	0.0037	171.0	2.60%	876.3	2.04%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-2	-6.734e+00	0.0041	351.0	5.33%	1949.1	4.53%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-2	-6.445e+00	0.0055	709.0	10.77%	4164.7	9.68%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-2	-6.438e+00	0.0055	313.0	4.76%	1729.6	4.02%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-2	-6.380e+00	0.0058	717.0	10.89%	4217.5	9.80%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-2	-6.351e+00	0.0059	151.0	2.29%	771.1	1.79%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-2	-6.338e+00	0.0059	168.0	2.55%	870.2	2.02%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-2	-6.319e+00	0.0060	466.0	7.08%	2665.4	6.19%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-2	-6.059e+00	0.0077	95.0	1.44%	457.2	1.06%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-5.976e+00	0.0083	412.0	6.26%	2347.1	5.45%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-2	-5.975e+00	0.0083	1228.0	18.66%	7460.0	17.33%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-2	-5.962e+00	0.0083	70.0	1.06%	320.2	0.74%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-5.850e+00	0.0092	2078.0	31.57%	12912.6	30.00%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-5.798e+00	0.0096	65.0	0.99%	295.7	0.69%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-2	-5.597e+00	0.0117	37.0	0.56%	149.7	0.35%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-2	-5.204e+00	0.0172	641.0	9.74%	3801.3	8.83%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-2	-4.985e+00	0.0212	135.0	2.05%	708.6	1.65%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-2	-4.910e+00	0.0227	8.0	0.12%	19.0	0.04%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-2	-4.799e+00	0.0252	1253.0	19.04%	7700.9	17.89%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-2	-4.663e+00	0.0286	275.0	4.18%	1558.9	3.62%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-2	-4.607e+00	0.0301	535.0	8.13%	3169.5	7.36%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-4.370e+00	0.0379	72.0	1.09%	356.6	0.83%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-1	-4.362e+00	0.0379	627.0	9.53%	3759.9	8.73%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-4.149e+00	0.0466	258.0	3.92%	1473.1	3.42%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-4.100e+00	0.0486	3258.0	49.50%	20738.1	48.18%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-1	-3.936e+00	0.0569	277.0	4.21%	1598.5	3.71%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-3.795e+00	0.0650	665.0	10.10%	4033.2	9.37%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-3.781e+00	0.0655	72.0	1.09%	367.5	0.85%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-3.747e+00	0.0673	154.0	2.34%	855.0	1.99%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-1	-3.730e+00	0.0680	504.0	7.66%	3022.6	7.02%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-3.711e+00	0.0688	682.0	10.36%	4146.6	9.63%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-3.583e+00	0.0777	93.0	1.41%	494.4	1.15%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-3.503e+00	0.0837	276.0	4.19%	1610.3	3.74%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-1	-3.466e+00	0.0863	157.0	2.39%	881.7	2.05%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-1	-3.439e+00	0.0880	350.0	5.32%	2073.3	4.82%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.249e+00	0.1058	122.0	1.85%	676.9	1.57%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.248e+00	0.1058	378.0	5.74%	2258.9	5.25%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-1	-3.188e+00	0.1111	126.0	1.91%	702.2	1.63%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-1	-3.126e+00	0.1174	445.0	6.76%	2686.6	6.24%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-3.113e+00	0.1183	1750.0	26.59%	11046.2	25.66%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-1	-3.101e+00	0.1189	592.0	8.99%	3617.6	8.40%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-3.100e+00	0.1189	107.0	1.63%	590.6	1.37%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-3.064e+00	0.1219	105.0	1.60%	579.7	1.35%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-3.039e+00	0.1242	218.0	3.31%	1271.9	2.95%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-3.030e+00	0.1245	187.0	2.84%	1080.2	2.51%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-1	-3.004e+00	0.1271	325.0	4.94%	1939.7	4.51%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-2.927e+00	0.1364	79.0	1.20%	427.7	0.99%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-2.924e+00	0.1364	52.0	0.79%	268.2	0.62%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-2.892e+00	0.1396	1097.0	16.67%	6860.5	15.94%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-2.822e+00	0.1488	196.0	2.98%	1144.6	2.66%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-2.806e+00	0.1504	187.0	2.84%	1089.8	2.53%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-2.771e+00	0.1549	809.0	12.29%	5025.9	11.68%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-1	-2.749e+00	0.1574	270.0	4.10%	1608.4	3.74%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-2.748e+00	0.1574	114.0	1.73%	643.1	1.49%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-2.717e+00	0.1606	491.0	7.46%	3003.6	6.98%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-2.707e+00	0.1614	121.0	1.84%	687.3	1.60%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-2.666e+00	0.1672	90.0	1.37%	501.0	1.16%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-2.629e+00	0.1724	29.0	0.44%	141.3	0.33%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-2.536e+00	0.1883	1404.0	21.33%	8875.1	20.62%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-2.523e+00	0.1898	237.0	3.60%	1413.6	3.28%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-2.480e+00	0.1970	168.0	2.55%	985.5	2.29%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-1	-2.471e+00	0.1976	424.0	6.44%	2595.0	6.03%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-2.437e+00	0.2034	154.0	2.34%	900.1	2.09%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-2.434e+00	0.2034	507.0	7.70%	3125.1	7.26%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-1	-2.346e+00	0.2204	1297.0	19.71%	8206.7	19.07%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.341e+00	0.2204	294.0	4.47%	1781.4	4.14%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-1	-2.333e+00	0.2208	120.0	1.82%	694.9	1.61%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-2.325e+00	0.2215	178.0	2.70%	1054.2	2.45%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-2.322e+00	0.2215	155.0	2.35%	911.9	2.12%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-2.285e+00	0.2280	5.0	0.08%	16.0	0.04%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-2.249e+00	0.2352	83.0	1.26%	470.2	1.09%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-2.205e+00	0.2444	16.0	0.24%	74.6	0.17%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-2.194e+00	0.2459	316.0	4.80%	1929.0	4.48%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.125e+00	0.2622	130.0	1.98%	764.6	1.78%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.085e+00	0.2715	81.0	1.23%	463.5	1.08%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.015e+00	0.2896	79.0	1.20%	453.3	1.05%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.996e+00	0.2937	229.0	3.48%	1391.5	3.23%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.988e+00	0.2947	530.0	8.05%	3308.1	7.69%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.913e+00	0.3160	1159.0	17.61%	7367.2	17.12%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.879e+00	0.3253	50.0	0.76%	280.6	0.65%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-1.863e+00	0.3289	674.0	10.24%	4244.2	9.86%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.825e+00	0.3399	141.0	2.14%	846.0	1.97%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-1.765e+00	0.3592	420.0	6.38%	2623.8	6.10%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-1.683e+00	0.3878	1285.0	19.52%	8214.5	19.08%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.676e+00	0.3889	263.0	4.00%	1627.0	3.78%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.665e+00	0.3910	68.0	1.03%	397.1	0.92%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.638e+00	0.4000	285.0	4.33%	1770.6	4.11%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.637e+00	0.4000	68.0	1.03%	398.9	0.93%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.618e+00	0.4041	1193.0	18.13%	7627.8	17.72%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.616e+00	0.4041	38.0	0.58%	214.5	0.50%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.561e+00	0.4238	343.0	5.21%	2147.3	4.99%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.558e+00	0.4238	551.0	8.37%	3484.9	8.10%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.552e+00	0.4238	309.0	4.69%	1930.0	4.48%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.550e+00	0.4238	18.0	0.27%	95.5	0.22%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.543e+00	0.4238	108.0	1.64%	652.2	1.52%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.498e+00	0.4411	17.0	0.26%	90.6	0.21%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.492e+00	0.4415	19.0	0.29%	102.7	0.24%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.478e+00	0.4457	40.0	0.61%	230.6	0.54%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.459e+00	0.4503	48.0	0.73%	280.6	0.65%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.459e+00	0.4503	48.0	0.73%	280.6	0.65%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.393e+00	0.4786	768.0	11.67%	4906.0	11.40%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.378e+00	0.4838	1052.0	15.98%	6748.6	15.68%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.370e+00	0.4855	1218.0	18.51%	7827.3	18.18%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.354e+00	0.4910	76.0	1.15%	459.5	1.07%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-1.354e+00	0.4910	62.0	0.94%	371.2	0.86%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.347e+00	0.4910	61.0	0.93%	365.2	0.85%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.341e+00	0.4910	265.0	4.03%	1665.1	3.87%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-1.332e+00	0.4931	370.0	5.62%	2342.0	5.44%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.326e+00	0.4943	460.0	6.99%	2923.0	6.79%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.316e+00	0.4970	36.0	0.55%	210.8	0.49%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.255e+00	0.5258	112.0	1.70%	692.2	1.61%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.251e+00	0.5258	48.0	0.73%	287.6	0.67%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.226e+00	0.5365	105.0	1.60%	649.2	1.51%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.219e+00	0.5382	22.0	0.33%	126.6	0.29%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.218e+00	0.5382	743.0	11.29%	4767.4	11.08%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.157e+00	0.5679	150.0	2.28%	942.0	2.19%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.126e+00	0.5833	469.0	7.13%	3003.2	6.98%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-1.099e+00	0.5965	22.0	0.33%	129.5	0.30%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.089e+00	0.6003	359.0	5.45%	2295.8	5.33%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.086e+00	0.6003	290.0	4.41%	1849.5	4.30%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.072e+00	0.6056	397.0	6.03%	2543.6	5.91%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.054e+00	0.6136	236.0	3.59%	1503.1	3.49%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.039e+00	0.6207	1002.0	15.22%	6479.3	15.05%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-9.782e-01	0.6568	174.0	2.64%	1109.8	2.58%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-9.625e-01	0.6645	713.0	10.83%	4611.3	10.71%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-9.585e-01	0.6645	349.0	5.30%	2245.1	5.22%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-9.361e-01	0.6768	6.0	0.09%	33.3	0.08%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-9.285e-01	0.6792	414.0	6.29%	2671.3	6.21%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-9.173e-01	0.6841	211.0	3.21%	1354.7	3.15%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-8.705e-01	0.7140	1664.0	25.28%	10832.4	25.17%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-8.605e-01	0.7184	482.0	7.32%	3123.2	7.26%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-8.576e-01	0.7184	124.0	1.88%	795.3	1.85%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-8.365e-01	0.7300	219.0	3.33%	1415.0	3.29%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-8.185e-01	0.7403	26.0	0.40%	163.5	0.38%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-8.158e-01	0.7403	999.0	15.18%	6503.4	15.11%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-8.091e-01	0.7416	23.0	0.35%	144.6	0.34%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-7.613e-01	0.7748	4.0	0.06%	23.2	0.05%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-7.577e-01	0.7748	501.0	7.61%	3263.3	7.58%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-7.576e-01	0.7748	395.0	6.00%	2571.6	5.97%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-7.458e-01	0.7778	335.0	5.09%	2181.4	5.07%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-7.454e-01	0.7778	93.0	1.41%	602.7	1.40%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-7.378e-01	0.7782	688.0	10.45%	4488.4	10.43%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-7.317e-01	0.7799	43.0	0.65%	277.8	0.65%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-7.248e-01	0.7824	5.0	0.08%	30.2	0.07%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-7.139e-01	0.7880	26.0	0.40%	167.5	0.39%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-7.111e-01	0.7880	449.0	6.82%	2931.8	6.81%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-7.041e-01	0.7898	12.0	0.18%	76.5	0.18%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-6.881e-01	0.7996	553.0	8.40%	3615.8	8.40%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-6.772e-01	0.8053	234.0	3.56%	1530.5	3.56%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.633e-01	0.8136	10.0	0.15%	64.3	0.15%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-6.549e-01	0.8175	66.0	1.00%	432.0	1.00%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-6.494e-01	0.8190	37.0	0.56%	242.0	0.56%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-6.346e-01	0.8281	22.0	0.33%	144.7	0.34%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-6.063e-01	0.8488	391.0	5.94%	2569.7	5.97%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-6.054e-01	0.8488	60.0	0.91%	396.2	0.92%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-5.851e-01	0.8607	71.0	1.08%	470.7	1.09%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-5.830e-01	0.8607	91.0	1.38%	602.6	1.40%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-5.606e-01	0.8758	58.0	0.88%	386.4	0.90%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-5.514e-01	0.8807	65.0	0.99%	434.0	1.01%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-5.376e-01	0.8897	193.0	2.93%	1279.8	2.97%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-5.301e-01	0.8932	1352.0	20.54%	8887.1	20.65%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-4.936e-01	0.9232	27.0	0.41%	184.8	0.43%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-4.879e-01	0.9252	238.0	3.62%	1583.9	3.68%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-4.615e-01	0.9466	41.0	0.62%	280.5	0.65%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-4.514e-01	0.9529	149.0	2.26%	1000.6	2.32%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-4.324e-01	0.9678	178.0	2.70%	1195.3	2.78%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-4.261e-01	0.9705	429.0	6.52%	2855.8	6.63%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-4.173e-01	0.9757	77.0	1.17%	525.7	1.22%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-4.048e-01	0.9845	68.0	1.03%	466.9	1.08%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-3.902e-01	0.9956	43.0	0.65%	299.6	0.70%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.436e-01	1.0000	893.0	13.57%	5938.8	13.80%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-3.318e-01	1.0000	88.0	1.34%	609.0	1.41%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-3.303e-01	1.0000	218.0	3.31%	1479.0	3.44%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-3.297e-01	1.0000	571.0	8.68%	3819.6	8.87%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.288e-01	1.0000	4.0	0.06%	32.1	0.07%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-3.211e-01	1.0000	657.0	9.98%	4390.9	10.20%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.207e-01	1.0000	105.0	1.60%	726.0	1.69%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-3.173e-01	1.0000	430.0	6.53%	2890.4	6.71%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-2.999e-01	1.0000	904.0	13.73%	6028.4	14.01%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.970e-01	1.0000	1412.0	21.45%	9374.8	21.78%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.806e-01	1.0000	38.0	0.58%	275.0	0.64%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.758e-01	1.0000	79.0	1.20%	556.3	1.29%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.638e-01	1.0000	493.0	7.49%	3325.0	7.72%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.635e-01	1.0000	569.0	8.64%	3829.2	8.90%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.624e-01	1.0000	339.0	5.15%	2302.1	5.35%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.562e-01	1.0000	250.0	3.80%	1710.6	3.97%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.454e-01	1.0000	9.0	0.14%	73.3	0.17%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-2.454e-01	1.0000	1039.0	15.79%	6944.8	16.13%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-2.448e-01	1.0000	2057.0	31.25%	13642.0	31.69%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.328e-01	1.0000	218.0	3.31%	1502.3	3.49%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-2.276e-01	1.0000	36.0	0.55%	267.5	0.62%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.175e-01	1.0000	186.0	2.83%	1291.4	3.00%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-2.089e-01	1.0000	418.0	6.35%	2847.2	6.61%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.058e-01	1.0000	718.0	10.91%	4842.4	11.25%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-2.034e-01	1.0000	322.0	4.89%	2209.0	5.13%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-2.015e-01	1.0000	620.0	9.42%	4194.8	9.75%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.005e-01	1.0000	67.0	1.02%	486.8	1.13%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.915e-01	1.0000	89.0	1.35%	639.3	1.49%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.911e-01	1.0000	158.0	2.40%	1109.5	2.58%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.902e-01	1.0000	43.0	0.65%	321.8	0.75%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.842e-01	1.0000	1213.0	18.43%	8129.4	18.89%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.781e-01	1.0000	142.0	2.16%	1004.7	2.33%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.768e-01	1.0000	19.0	0.29%	152.9	0.36%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-1.752e-01	1.0000	125.0	1.90%	889.7	2.07%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.718e-01	1.0000	604.0	9.18%	4103.5	9.53%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-1.664e-01	1.0000	85.0	1.29%	617.9	1.44%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.626e-01	1.0000	205.0	3.11%	1436.8	3.34%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.599e-01	1.0000	27.0	0.41%	212.3	0.49%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.514e-01	1.0000	247.0	3.75%	1724.7	4.01%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.396e-01	1.0000	163.0	2.48%	1159.5	2.69%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-1.352e-01	1.0000	197.0	2.99%	1392.7	3.24%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.303e-01	1.0000	644.0	9.78%	4395.9	10.21%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.261e-01	1.0000	104.0	1.58%	759.1	1.76%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.245e-01	1.0000	38.0	0.58%	297.1	0.69%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.189e-01	1.0000	118.0	1.79%	858.2	1.99%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.029e-01	1.0000	28.0	0.43%	229.3	0.53%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-9.954e-02	1.0000	220.0	3.34%	1565.4	3.64%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-9.921e-02	1.0000	1022.0	15.53%	6936.8	16.12%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-9.571e-02	1.0000	2551.0	38.76%	17025.9	39.55%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-9.508e-02	1.0000	467.0	7.10%	3237.8	7.52%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-9.355e-02	1.0000	6.0	0.09%	62.5	0.15%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-9.233e-02	1.0000	72.0	1.09%	547.4	1.27%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-8.904e-02	1.0000	610.0	9.27%	4201.3	9.76%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-7.579e-02	1.0000	222.0	3.37%	1593.3	3.70%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-7.542e-02	1.0000	173.0	2.63%	1257.9	2.92%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-7.064e-02	1.0000	1274.0	19.36%	8644.1	20.08%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-6.106e-02	1.0000	255.0	3.87%	1830.2	4.25%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-5.749e-02	1.0000	581.0	8.83%	4041.6	9.39%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-5.550e-02	1.0000	170.0	2.58%	1251.0	2.91%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-5.414e-02	1.0000	661.0	10.04%	4583.3	10.65%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-5.191e-02	1.0000	68.0	1.03%	536.7	1.25%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-5.097e-02	1.0000	566.0	8.60%	3949.8	9.18%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-4.360e-02	1.0000	678.0	10.30%	4714.7	10.95%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.323e-02	1.0000	92.0	1.40%	713.5	1.66%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-4.299e-02	1.0000	344.0	5.23%	2457.5	5.71%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-4.235e-02	1.0000	80.0	1.22%	628.5	1.46%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.018e-02	1.0000	161.0	2.45%	1201.6	2.79%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-3.925e-02	1.0000	974.0	14.80%	6705.8	15.58%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-3.732e-02	1.0000	264.0	4.01%	1917.2	4.45%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-3.637e-02	1.0000	54.0	0.82%	444.7	1.03%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-3.136e-02	1.0000	1879.0	28.55%	12736.4	29.59%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.955e-02	1.0000	182.0	2.77%	1360.5	3.16%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.788e-02	1.0000	145.0	2.20%	1103.5	2.56%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.670e-02	1.0000	10.0	0.15%	111.1	0.26%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-2.602e-02	1.0000	259.0	3.93%	1900.2	4.41%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.042e-02	1.0000	142.0	2.16%	1093.7	2.54%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.041e-02	1.0000	315.0	4.79%	2298.8	5.34%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.927e-02	1.0000	18.0	0.27%	182.1	0.42%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.780e-02	1.0000	871.0	13.23%	6079.1	14.12%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.745e-02	1.0000	2546.0	38.68%	17195.3	39.95%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.724e-02	1.0000	22.0	0.33%	216.7	0.50%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.546e-02	1.0000	215.0	3.27%	1617.7	3.76%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.383e-02	1.0000	68.0	1.03%	571.7	1.33%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.136e-02	1.0000	203.0	3.08%	1545.7	3.59%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-1.103e-02	1.0000	524.0	7.96%	3763.1	8.74%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-9.218e-03	1.0000	205.0	3.11%	1567.2	3.64%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-8.105e-03	1.0000	2.0	0.03%	45.6	0.11%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-8.072e-03	1.0000	800.0	12.15%	5656.3	13.14%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-7.210e-03	1.0000	25.0	0.38%	254.2	0.59%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-6.124e-03	1.0000	168.0	2.55%	1319.6	3.07%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-4.681e-03	1.0000	101.0	1.53%	842.7	1.96%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.548e-03	1.0000	1764.0	26.80%	12153.6	28.23%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-4.539e-03	1.0000	35.0	0.53%	342.7	0.80%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-4.452e-03	1.0000	389.0	5.91%	2882.2	6.70%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.364e-03	1.0000	363.0	5.52%	2714.2	6.31%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.785e-03	1.0000	87.0	1.32%	751.6	1.75%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-2.420e-03	1.0000	978.0	14.86%	6937.9	16.12%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-2.348e-03	1.0000	719.0	10.92%	5181.5	12.04%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.573e-03	1.0000	236.0	3.59%	1850.5	4.30%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-1.525e-03	1.0000	827.0	12.56%	5941.4	13.80%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.194e-03	1.0000	724.0	11.00%	5252.1	12.20%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-1.128e-03	1.0000	340.0	5.17%	2598.2	6.04%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-9.750e-04	1.0000	136.0	2.07%	1141.7	2.65%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-8.500e-04	1.0000	767.0	11.65%	5564.6	12.93%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-6.770e-04	1.0000	130.0	1.98%	1106.2	2.57%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-4.300e-04	1.0000	297.0	4.51%	2329.5	5.41%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.200e-04	1.0000	720.0	10.94%	5309.8	12.34%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.870e-04	1.0000	1350.0	20.51%	9604.7	22.31%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.710e-04	1.0000	402.0	6.11%	3106.9	7.22%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.710e-04	1.0000	737.0	11.20%	5438.6	12.63%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.280e-04	1.0000	197.0	2.99%	1644.3	3.82%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-9.000e-05	1.0000	411.0	6.24%	3193.3	7.42%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-6.700e-05	1.0000	1379.0	20.95%	9858.7	22.90%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-5.300e-05	1.0000	331.0	5.03%	2641.7	6.14%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-4.600e-05	1.0000	36.0	0.55%	420.4	0.98%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-3.800e-05	1.0000	76.0	1.15%	753.9	1.75%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-3.300e-05	1.0000	173.0	2.63%	1501.9	3.49%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-3.200e-05	1.0000	328.0	4.98%	2636.4	6.12%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-3.000e-05	1.0000	2079.0	31.59%	14595.8	33.91%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.300e-05	1.0000	341.0	5.18%	2739.0	6.36%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-2.000e-05	1.0000	7.0	0.11%	153.7	0.36%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.700e-05	1.0000	243.0	3.69%	2036.6	4.73%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.500e-05	1.0000	1020.0	15.50%	7495.7	17.41%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.100e-05	1.0000	303.0	4.60%	2487.5	5.78%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.000e-06	1.0000	614.0	9.33%	4762.4	11.06%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.000e-06	1.0000	27.0	0.41%	382.0	0.89%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-1.000e-06	1.0000	1578.0	23.97%	11419.1	26.53%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-0.000e+00	1.0000	371.0	5.64%	3116.2	7.24%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-0.000e+00	1.0000	226.0	3.43%	2068.1	4.80%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-0.000e+00	1.0000	315.0	4.79%	2920.1	6.78%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-0.000e+00	1.0000	1116.0	16.96%	9009.1	20.93%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	5.3	0.01%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	795.0	12.08%	7247.7	16.84%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	27.3	0.06%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	925.0	14.05%	8750.0	20.33%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	521.0	7.92%	4942.7	11.48%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	3.7	0.01%