Information for 11-GAAATTCTTGAT (Motif 12)

A C T G C G T A C G T A C G T A A C G T A G C T A G T C A C G T A C G T A C T G C G T A A G C T
Reverse Opposite:
C T G A A C G T A G T C C G T A C G T A A C T G C T G A C G T A A C G T A C G T A C G T A G T C
p-value:1e-5
log p-value:-1.162e+01
Information Content per bp:1.949
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.32%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets94.8 +/- 53.3bp
Average Position of motif in Background58.7 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)2.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0136.1_IRC900814_2/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GAAATTCTTGAT-
ATGGAAAGTCGTAAAA
 A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A G C T A G T C A C G T A C G T A C T G C G T A A G C T A C G T
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

PB0139.1_Irf5_2/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAAATTCTTGAT---
NNAATTCTCGNTNAN
 A C T G C G T A C G T A C G T A A C G T A G C T A G T C A C G T A C G T A C T G C G T A A G C T A C G T A C G T A C G T
A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A

PB0197.1_Zfp105_2/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAAATTCTTGAT----
NAAANTTATTGAANCAN
 A C G T A C T G C G T A C G T A C G T A A C G T A G C T A G T C A C G T A C G T A C T G C G T A A G C T A C G T A C G T A C G T A C G T
G A T C G T C A T C G A G T C A T C G A C G A T A G C T T C G A A C G T A C G T A C T G T C G A T G C A A G T C G T A C T C G A G A C T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GAAATTCTTGAT
AAGATATCCTT---
 A C G T A C G T A C T G C G T A C G T A C G T A A C G T A G C T A G T C A C G T A C G T A C T G C G T A A G C T
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAAATTCTTGAT---
-ACATTCATGACACG
 A C T G C G T A C G T A C G T A A C G T A G C T A G T C A C G T A C G T A C T G C G T A A G C T A C G T A C G T A C G T
A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

MF0010.1_Homeobox_class/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAAATTCTTGAT
--AATTATT---
 A C T G C G T A C G T A C G T A A C G T A G C T A G T C A C G T A C G T A C T G C G T A A G C T
A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GAAATTCTTGAT--
GGAAAAATTGTTAGGAA
 A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A G C T A G T C A C G T A C G T A C T G C G T A A G C T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

PB0144.1_Lef1_2/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GAAATTCTTGAT----
NNANTGATTGATNTTN
 A C T G C G T A C G T A C G T A A C G T A G C T A G T C A C G T A C G T A C T G C G T A A G C T A C G T A C G T A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAAATTCTTGAT
GGAAATTCCC---
 A C G T A C T G C G T A C G T A C G T A A C G T A G C T A G T C A C G T A C G T A C T G C G T A A G C T
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

Sox11/MA0869.1/Jaspar

Match Rank:10
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GAAATTCTTGAT
AACACTGAAATTGTT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A G C T A G T C A C G T A C G T A C T G C G T A A G C T
T C G A C G T A A G T C G T C A G T A C A C G T C T A G G T C A C T G A C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T