Information for 9-CATAGCAGAGAG (Motif 4)

A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G C G T A A C T G C G T A A T C G
Reverse Opposite:
A T G C A C G T A G T C A C G T A G T C A C G T A C T G A G T C A C G T C G T A C G A T A C T G
p-value:1e-11
log p-value:-2.621e+01
Information Content per bp:1.954
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets101.0 +/- 59.3bp
Average Position of motif in Background86.8 +/- 45.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CATAGCAGAGAG--
--RHHCAGAGAGGB
 A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G C G T A A C T G C G T A A T C G A C G T A C G T
A C G T A C G T T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CATAGCAGAGAG
CACAGCAGGGGG
 A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G C G T A A C T G C G T A A T C G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CATAGCAGAGAG
CCGCATAGCAACGGA
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G C G T A A C T G C G T A A T C G
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CATAGCAGAGAG
TACCATAGCAACGGT
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G C G T A A C T G C G T A A T C G
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CATAGCAGAGAG--
----GCAGTGATTT
 A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G C G T A A C T G C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CATAGCAGAGAG--
DCHCAGCAGGRGGCC
 A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G C G T A A C T G C G T A A T C G A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.52
Offset:-7
Orientation:forward strand
Alignment:-------CATAGCAGAGAG----
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G C G T A A C T G C G T A A T C G A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0140.1_Irf6_2/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CATAGCAGAGAG----
-NNNACCGAGAGTNNN
 A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G C G T A A C T G C G T A A T C G A C G T A C G T A C G T A C G T
A C G T A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CATAGCAGAGAG--
----CCAGACRSVB
 A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G C G T A A C T G C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:CATAGCAGAGAG
----CCAGACAG
 A G T C C G T A A C G T C G T A A C T G A G T C C G T A A C T G C G T A A C T G C G T A A T C G
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G