Information for 4-CAGSCTAC (Motif 8)

A G T C G T C A T C A G T A G C A G T C A G C T C T G A T G A C
Reverse Opposite:
A C T G G A C T T C G A T C A G A T C G A G T C C A G T T C A G
p-value:1e-6
log p-value:-1.474e+01
Information Content per bp:1.529
Number of Target Sequences with motif244.0
Percentage of Target Sequences with motif26.10%
Number of Background Sequences with motif9501.4
Percentage of Background Sequences with motif19.42%
Average Position of motif in Targets97.3 +/- 56.8bp
Average Position of motif in Background99.0 +/- 57.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CAGSCTAC
BCAGACWA-
 A C G T A G T C G T C A T C A G T A G C A G T C A G C T C T G A T G A C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

PB0154.1_Osr1_2/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CAGSCTAC-------
ACATGCTACCTAATAC
 A C G T A G T C G T C A T C A G T A G C A G T C A G C T C T G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

PB0161.1_Rxra_2/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CAGSCTAC----
NNNNCAACCTTCGNGA
 A C G T A C G T A C G T A C G T A G T C G T C A T C A G T A G C A G T C A G C T C T G A T G A C A C G T A C G T A C G T A C G T
G T C A C A T G G C A T C T G A A G T C T C G A T G C A T G A C G A T C C G A T C G A T A G T C C A T G A G T C A C T G G T C A

PB0155.1_Osr2_2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAGSCTAC-------
ACTTGCTACCTACACC
 A C G T A G T C G T C A T C A G T A G C A G T C A G C T C T G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G A T C G A C T G A C T T A C G A G T C G A C T G C T A G T A C G A T C G C A T T C G A G T A C C G T A A G C T T G A C

PB0181.1_Spdef_2/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CAGSCTAC---
GATAACATCCTAGTAG
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A T C A G T A G C A G T C A G C T C T G A T G A C A C G T A C G T A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

SIX1/MA1118.1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CAGSCTAC
TATCAGGTTAC
 A C G T A C G T A C G T A G T C G T C A T C A G T A G C A G T C A G C T C T G A T G A C
C A G T T G C A G C A T G A T C C G T A C A T G C T A G G C A T C G A T G C T A G T A C

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CAGSCTAC
CNGTCACGCCAC
 A C G T A C G T A C G T A C G T A G T C G T C A T C A G T A G C A G T C A G C T C T G A T G A C
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

KLF4/MA0039.3/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CAGSCTAC
CCACACCCTGC
 A C G T A C G T A C G T A G T C G T C A T C A G T A G C A G T C A G C T C T G A T G A C
T G A C T G A C T C G A G T A C C T G A A G T C T G A C G A T C G C A T A T C G G A T C

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CAGSCTAC-
---GCTTCC
 A G T C G T C A T C A G T A G C A G T C A G C T C T G A T G A C A C G T
A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

PB0051.1_Osr2_1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGSCTAC-------
CNNNGCTACTGTANNN
 A C G T A G T C G T C A T C A G T A G C A G T C A G C T C T G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T