Information for 11-GRTGTACCTA (Motif 9)

C T A G C T G A A G C T A T C G A G C T G C T A T A G C A G T C A C G T G T C A
Reverse Opposite:
A C G T C G T A C T A G A T C G C G A T C T G A T A G C T C G A A G C T A G T C
p-value:1e-6
log p-value:-1.457e+01
Information Content per bp:1.705
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.71%
Number of Background Sequences with motif175.7
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets115.5 +/- 50.4bp
Average Position of motif in Background107.4 +/- 55.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GRTGTACCTA--
--GTTAACTAGN
 C T A G C T G A A G C T A T C G A G C T G C T A T A G C A G T C A C G T G T C A A C G T A C G T
A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GRTGTACCTA-----
NNNGTAACTANGNNA
 C T A G C T G A A G C T A T C G A G C T G C T A T A G C A G T C A C G T G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

PB0094.1_Zfp128_1/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GRTGTACCTA--
TCTTTGGCGTACCCTAA
 A C G T A C G T A C G T A C G T A C G T C T A G C T G A A G C T A T C G A G C T G C T A T A G C A G T C A C G T G T C A A C G T A C G T
A C G T G A T C G C A T C A G T C A G T C A T G C T A G A G T C C T A G A C G T C G T A G T A C T A G C A G T C A G C T G T C A C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GRTGTACCTA---
-CTGTTGCTAGGS
 C T A G C T G A A G C T A T C G A G C T G C T A T A G C A G T C A C G T G T C A A C G T A C G T A C G T
A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GRTGTACCTA-----
NCCGTTGCTANGNGN
 C T A G C T G A A G C T A T C G A G C T G C T A T A G C A G T C A C G T G T C A A C G T A C G T A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0156.1_Plagl1_2/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GRTGTACCTA--
GCTGGGGGGTACCCCTT
 A C G T A C G T A C G T A C G T A C G T C T A G C T G A A G C T A T C G A G C T G C T A T A G C A G T C A C G T G T C A A C G T A C G T
C T A G A G T C G C A T C T A G C A T G A C T G C T A G A C T G A C T G A C G T C T G A G A T C G T A C G T A C G A T C G A C T C G A T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GRTGTACCTA-
-RYHYACCTGB
 C T A G C T G A A G C T A T C G A G C T G C T A T A G C A G T C A C G T G T C A A C G T
A C G T T C A G A G C T G C T A A G T C C G T A G T A C A T G C A C G T A C T G A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GRTGTACCTA-
AATGTATCAAT
 C T A G C T G A A G C T A T C G A G C T G C T A T A G C A G T C A C G T G T C A A C G T
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GRTGTACCTA---------
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T C T A G C T G A A G C T A T C G A G C T G C T A T A G C A G T C A C G T G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GRTGTACCTA---------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T C T A G C T G A A G C T A T C G A G C T G C T A T A G C A G T C A C G T G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A