Information for 4-YGATGATT (Motif 10)

G A C T C T A G C T G A C G A T T C A G G T C A A G C T C A G T
Reverse Opposite:
G T C A C T G A A C G T A G T C G C T A G A C T G A T C C T G A
p-value:1e-7
log p-value:-1.658e+01
Information Content per bp:1.669
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif14.71%
Number of Background Sequences with motif653.2
Percentage of Background Sequences with motif1.47%
Average Position of motif in Targets108.1 +/- 75.5bp
Average Position of motif in Background100.6 +/- 85.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--YGATGATT-------
TNNNATGATTTCNNCNN
 A C G T A C G T G A C T C T A G C T G A C G A T T C A G G T C A A G C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

Dux/MA0611.1/Jaspar

Match Rank:2
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:YGATGATT--
--TTGATTGN
 G A C T C T A G C T G A C G A T T C A G G T C A A G C T C A G T A C G T A C G T
A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

Gfi1/MA0038.1/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:YGATGATT--
CNGTGATTTN
 G A C T C T A G C T G A C G A T T C A G G T C A A G C T C A G T A C G T A C G T
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G

PH0017.1_Cux1_2/Jaspar

Match Rank:4
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---YGATGATT----
TAATGATGATCACTA
 A C G T A C G T A C G T G A C T C T A G C T G A C G A T T C A G G T C A A G C T C A G T A C G T A C G T A C G T A C G T
C G A T T G C A T C G A A G C T C A T G G C T A C G A T C T A G C G T A C A G T G A T C T C G A G T A C C G A T C G T A

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.71
Offset:1
Orientation:forward strand
Alignment:YGATGATT
-AATAATT
 G A C T C T A G C T G A C G A T T C A G G T C A A G C T C A G T
A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:6
Score:0.71
Offset:1
Orientation:forward strand
Alignment:YGATGATT
-CATGAC-
 G A C T C T A G C T G A C G A T T C A G G T C A A G C T C A G T
A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.70
Offset:2
Orientation:forward strand
Alignment:YGATGATT------
--RTGATTKATRGN
 G A C T C T A G C T G A C G A T T C A G G T C A A G C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:YGATGATT------
--ATGATKGATGRC
 G A C T C T A G C T G A C G A T T C A G G T C A A G C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

EVX1/MA0887.1/Jaspar

Match Rank:9
Score:0.67
Offset:1
Orientation:forward strand
Alignment:YGATGATT---
-GGTAATTAGC
 G A C T C T A G C T G A C G A T T C A G G T C A A G C T C A G T A C G T A C G T A C G T
A C G T T C A G T A C G G A C T T C G A T C G A A C G T G A C T C T G A A T C G T A G C

DUXA/MA0884.1/Jaspar

Match Rank:10
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:YGATGATT-------
--NTGATTAAATTAN
 G A C T C T A G C T G A C G A T T C A G G T C A A G C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T G C A T T C A G T G C A A G C T A C G T T C G A T C G A C T G A A G C T G A C T C T G A C T A G