Information for 20-GAGCCTAGAC (Motif 20)

A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C C G A T C G T A C T A G A C T G A G T C C G A T A G T C
p-value:1e-18
log p-value:-4.182e+01
Information Content per bp:1.958
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.85%
Number of Background Sequences with motif8.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets84.4 +/- 55.3bp
Average Position of motif in Background69.4 +/- 40.7bp
Strand Bias (log2 ratio + to - strand density)2.7
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD3/MA0795.1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GAGCCTAGAC-
-TGTCTAGACG
 A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C A C G T
A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G

Smad4/MA1153.1/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GAGCCTAGAC-
---TCTAGACA
 A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAGCCTAGAC------
CAAATCCAGACATCACA
 A C G T A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GAGCCTAGAC--
----CCAGACAG
 A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GAGCCTAGAC----
----CCAGACRSVB
 A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GAGCCTAGAC--
----BCAGACWA
 A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAGCCTAGAC
CAGCC-----
 A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAGCCTAGAC
AGGCCTAG--
 A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T

Rxra/MA0512.2/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GAGCCTAGAC---
TGACCTTTGACCCC
 A C G T A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C A C G T A C G T A C G T
A G C T T C A G T G C A T G A C T A G C A G C T G A C T A G C T T C A G T G C A G T A C G T A C A G T C A G T C

RXRB/MA0855.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GAGCCTAGAC---
TGACCTTTGACCCC
 A C G T A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C A C G T A C G T A C G T
A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G A T C A G T C A G T C