Information for 6-YCGTTTSAAACG (Motif 4)

A G C T A G T C A C T G A G C T A C G T A C G T A T G C T G C A C T G A C G T A G T A C A C T G
Reverse Opposite:
A G T C A C T G A C G T A G C T A C G T A T C G G T C A C G T A C T G A A G T C A C T G C T A G
p-value:1e-133
log p-value:-3.069e+02
Information Content per bp:1.798
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif7.91%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets111.8 +/- 50.8bp
Average Position of motif in Background98.8 +/- 2.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CENPB/MA0637.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-YCGTTTSAAACG--
CCCGCATACAACGAA
 A C G T A G C T A G T C A C T G A G C T A C G T A C G T A T G C T G C A C T G A C G T A G T A C A C T G A C G T A C G T
G A T C G A T C G A T C A C T G A G T C C G T A G A C T T G C A T A G C G C T A T C G A G T A C T C A G G C T A G T C A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:YCGTTTSAAACG
CGGTTTCAAA--
 A G C T A G T C A C T G A G C T A C G T A C G T A T G C T G C A C T G A C G T A G T A C A C T G
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T

PH0044.1_Homez/Jaspar

Match Rank:3
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------YCGTTTSAAACG
AAAACATCGTTTTTAAG-
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C A C T G A G C T A C G T A C G T A T G C T G C A C T G A C G T A G T A C A C T G
C G T A G C A T G C T A G C T A T G A C G C T A A C G T G T A C A C T G C G A T C G A T G C A T G A C T A G C T G C T A C T G A C T A G A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---YCGTTTSAAACG-
GGGCCGTGTGCAAAAA
 A C G T A C G T A C G T A G C T A G T C A C T G A G C T A C G T A C G T A T G C T G C A C T G A C G T A G T A C A C T G A C G T
C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---YCGTTTSAAACG
BRRCVGTTDN-----
 A C G T A C G T A C G T A G C T A G T C A C T G A G C T A C G T A C G T A T G C T G C A C T G A C G T A G T A C A C T G
A G C T C T A G C T A G A G T C T G C A A C T G A C G T C G A T C G T A T C A G A C G T A C G T A C G T A C G T A C G T

POL001.1_MTE/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----YCGTTTSAAACG---
NCGACCGCTCCGCTCGAAA
 A C G T A C G T A C G T A C G T A G C T A G T C A C T G A G C T A C G T A C G T A T G C T G C A C T G A C G T A G T A C A C T G A C G T A C G T A C G T
T C A G A T G C C T A G C G T A A T G C A G T C A C T G G A C T A C G T A T G C A T G C A C T G A G T C A C G T A G T C A C T G C T G A C T G A T C G A

LIN54/MA0619.1/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:YCGTTTSAAACG
--NATTCAAAT-
 A G C T A G T C A C T G A G C T A C G T A C G T A T G C T G C A C T G A C G T A G T A C A C T G
A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T

MTF1/MA0863.1/Jaspar

Match Rank:8
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---YCGTTTSAAACG
GTGCCGTGTGCAAA-
 A C G T A C G T A C G T A G C T A G T C A C T G A G C T A C G T A C G T A T G C T G C A C T G A C G T A G T A C A C T G
C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-YCGTTTSAAACG--
NNCGTTGCTATGGNN
 A C G T A G C T A G T C A C T G A G C T A C G T A C G T A T G C T G C A C T G A C G T A G T A C A C T G A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

BARHL2/MA0635.1/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-YCGTTTSAAACG
ANCGTTTANN---
 A C G T A G C T A G T C A C T G A G C T A C G T A C G T A T G C T G C A C T G A C G T A G T A C A C T G
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T A C G T A C G T