Information for 19-GTASTAAAGG (Motif 15)

A T C G A C G T C G T A A T C G A C G T C G T A C G T A C G T A A C T G A T C G
Reverse Opposite:
A T G C A G T C A C G T A C G T A C G T C G T A A T C G A C G T C G T A A T G C
p-value:1e-8
log p-value:-1.929e+01
Information Content per bp:1.899
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif8.20%
Number of Background Sequences with motif31.5
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets127.8 +/- 30.7bp
Average Position of motif in Background110.5 +/- 55.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GTASTAAAGG-
NGYCATAAAWCH
 A C G T A T C G A C G T C G T A A T C G A C G T C G T A C G T A C G T A A C T G A T C G A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GTASTAAAGG--
TAAAGTCGTAAAACGT
 A C G T A C G T A C G T A C G T A T C G A C G T C G T A A T C G A C G T C G T A C G T A C G T A A C T G A T C G A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTASTAAAGG
HDGYAATGAAAN
 A C G T A C G T A T C G A C G T C G T A A T C G A C G T C G T A C G T A C G T A A C T G A T C G
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A

PH0066.1_Hoxc11/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GTASTAAAGG--
TAAAGTCGTAAAATAG
 A C G T A C G T A C G T A C G T A T C G A C G T C G T A A T C G A C G T C G T A C G T A C G T A A C T G A T C G A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GTASTAAAGG
GGTAATAAAAA
 A C G T A T C G A C G T C G T A A T C G A C G T C G T A C G T A C G T A A C T G A T C G
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTASTAAAGG
GCAATAAAA-
 A T C G A C G T C G T A A T C G A C G T C G T A C G T A C G T A A C T G A T C G
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GTASTAAAGG--
TAAAGTCGTAAAACAT
 A C G T A C G T A C G T A C G T A T C G A C G T C G T A A T C G A C G T C G T A C G T A C G T A A C T G A T C G A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTASTAAAGG
VGCCATAAAA-
 A C G T A T C G A C G T C G T A A T C G A C G T C G T A C G T A C G T A A C T G A T C G
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTASTAAAGG
GTCGTAAAAA
 A T C G A C G T C G T A A T C G A C G T C G T A C G T A C G T A A C T G A T C G
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTASTAAAGG
GTCATAAAAN
 A T C G A C G T C G T A A T C G A C G T C G T A C G T A C G T A A C T G A T C G
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T