Information for 11-CTATGCGA (Motif 19)

A G T C A C G T C G T A A C G T A C T G A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A G T C C G T A A C G T C G T A A C T G
p-value:1e-6
log p-value:-1.594e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif6.56%
Number of Background Sequences with motif23.3
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets68.5 +/- 26.8bp
Average Position of motif in Background114.5 +/- 127.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU3F4/MA0789.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTATGCGA--
-TATGCAAAT
 A G T C A C G T C G T A A C G T A C T G A G T C A C T G C G T A A C G T A C G T
A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTATGCGA---
-TATGCAAATC
 A G T C A C G T C G T A A C G T A C T G A G T C A C T G C G T A A C G T A C G T A C G T
A C G T G A C T C G T A C A G T A C T G A G T C C G T A C G T A C G T A C A G T T G A C

POU5F1B/MA0792.1/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CTATGCGA--
-TATGCAAAT
 A G T C A C G T C G T A A C G T A C T G A G T C A C T G C G T A A C G T A C G T
A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

PB0161.1_Rxra_2/Jaspar

Match Rank:4
Score:0.63
Offset:-8
Orientation:reverse strand
Alignment:--------CTATGCGA
NNNNCAACCTTCGNGA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C G T A C T G A G T C A C T G C G T A
G T C A C A T G G C A T C T G A A G T C T C G A T G C A T G A C G A T C C G A T C G A T A G T C C A T G A G T C A C T G G T C A

Pou2f3/MA0627.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTATGCGA------
TTGTATGCAAATTAGA
 A C G T A C G T A G T C A C G T C G T A A C G T A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTATGCGA------
TTGTATGCAAATTAGA
 A C G T A C G T A G T C A C G T C G T A A C G T A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTATGCGA--
TTATGCAAAT
 A G T C A C G T C G T A A C G T A C T G A G T C A C T G C G T A A C G T A C G T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTATGCGA------
TTGTATGCAAATTAGA
 A C G T A C G T A G T C A C G T C G T A A C G T A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTATGCGA--
ATATGCAAAT
 A G T C A C G T C G T A A C G T A C T G A G T C A C T G C G T A A C G T A C G T
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTATGCGA-----
-TATGCWAATBAV
 A G T C A C G T C G T A A C G T A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G