Information for 9-CTAGACAGAAGC (Motif 6)

A G T C G C A T C G T A T A C G C G T A A T G C C G T A A C T G C G T A C G T A A C T G G T A C
Reverse Opposite:
C A T G G T A C A C G T C G A T A G T C A C G T A T C G A C G T A G T C A C G T C G T A A C T G
p-value:1e-31
log p-value:-7.206e+01
Information Content per bp:1.894
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif6.42%
Number of Background Sequences with motif29.1
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets111.8 +/- 52.1bp
Average Position of motif in Background96.5 +/- 60.8bp
Strand Bias (log2 ratio + to - strand density)4.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4/MA1153.1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CTAGACAGAAGC
TCTAGACA-----
 A C G T A G T C G C A T C G T A T A C G C G T A A T G C C G T A A C T G C G T A C G T A A C T G G T A C
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CTAGACAGAAGC
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A G T C G C A T C G T A T A C G C G T A A T G C C G T A A C T G C G T A C G T A A C T G G T A C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0050.1_Osr1_1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTAGACAGAAGC----
ATTTACAGTAGCAAAA
 A G T C G C A T C G T A T A C G C G T A A T G C C G T A A C T G C G T A C G T A A C T G G T A C A C G T A C G T A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

SMAD3/MA0795.1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CTAGACAGAAGC
CGTCTAGACA-----
 A C G T A C G T A C G T A G T C G C A T C G T A T A C G C G T A A T G C C G T A A C T G C G T A C G T A A C T G G T A C
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T A C G T A C G T A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTAGACAGAAGC----
ATGTACAGTAGCAAAG
 A G T C G C A T C G T A T A C G C G T A A T G C C G T A A C T G C G T A C G T A A C T G G T A C A C G T A C G T A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTAGACAGAAGC
CCAGACAG----
 A G T C G C A T C G T A T A C G C G T A A T G C C G T A A C T G C G T A C G T A A C T G G T A C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:CTAGACAGAAGC
------NGAAGC
 A G T C G C A T C G T A T A C G C G T A A T G C C G T A A C T G C G T A C G T A A C T G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTAGACAGAAGC
CCAGACRSVB--
 A G T C G C A T C G T A T A C G C G T A A T G C C G T A A C T G C G T A C G T A A C T G G T A C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTAGACAGAAGC
BCAGACWA----
 A G T C G C A T C G T A T A C G C G T A A T G C C G T A A C T G C G T A C G T A A C T G G T A C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTAGACAGAAGC
-TTGACAGC---
 A G T C G C A T C G T A T A C G C G T A A T G C C G T A A C T G C G T A C G T A A C T G G T A C
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T