Information for 11-TTTGAAACACTC (Motif 7)

A C G T C G A T A C G T A T C G C G T A C G T A C G T A G T A C C G T A A G T C A C G T A T G C
Reverse Opposite:
A T C G C G T A A C T G C G A T A C T G A C G T A C G T A C G T A T G C G T C A C G T A G T C A
p-value:1e-28
log p-value:-6.649e+01
Information Content per bp:1.867
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif6.42%
Number of Background Sequences with motif39.4
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets92.6 +/- 45.9bp
Average Position of motif in Background99.1 +/- 68.3bp
Strand Bias (log2 ratio + to - strand density)3.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TTTGAAACACTC
TTTGAAACCG--
 A C G T C G A T A C G T A T C G C G T A C G T A C G T A G T A C C G T A A G T C A C G T A T G C
A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:TTTGAAACACTC--
----MRSCACTYAA
 A C G T C G A T A C G T A T C G C G T A C G T A C G T A G T A C C G T A A G T C A C G T A T G C A C G T A C G T
A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TTTGAAACACTC--
----AAGCACTTAA
 A C G T C G A T A C G T A T C G C G T A C G T A C G T A G T A C C G T A A G T C A C G T A T G C A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TTTGAAACACTC--
----AASCACTCAA
 A C G T C G A T A C G T A T C G C G T A C G T A C G T A G T A C C G T A A G T C A C G T A T G C A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TTTGAAACACTC
-TTGCAACATN-
 A C G T C G A T A C G T A T C G C G T A C G T A C G T A G T A C C G T A A G T C A C G T A T G C
A C G T C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:TTTGAAACACTC---
----AGCCACTCAAG
 A C G T C G A T A C G T A T C G C G T A C G T A C G T A G T A C C G T A A G T C A C G T A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Sox5/MA0087.1/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TTTGAAACACTC
----NAACAAT-
 A C G T C G A T A C G T A T C G C G T A C G T A C G T A G T A C C G T A A G T C A C G T A T G C
A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTTGAAACACTC
NTTGATACATT-
 A C G T C G A T A C G T A T C G C G T A C G T A C G T A G T A C C G T A A G T C A C G T A T G C
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TTTGAAACACTC
ATTTGAATT----
 A C G T A C G T C G A T A C G T A T C G C G T A C G T A C G T A G T A C C G T A A G T C A C G T A T G C
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTTGAAACACTC
ACTGAAACCA--
 A C G T C G A T A C G T A T C G C G T A C G T A C G T A G T A C C G T A A G T C A C G T A T G C
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T