Information for 1-GATCAAGA (Motif 11)

T A C G C T G A G C A T T A G C G T C A T G C A T A C G C G T A
Reverse Opposite:
G C A T A T G C A C G T A C G T A T C G C G T A G A C T A T G C
p-value:1e-8
log p-value:-2.067e+01
Information Content per bp:1.525
Number of Target Sequences with motif129.0
Percentage of Target Sequences with motif20.22%
Number of Background Sequences with motif5798.8
Percentage of Background Sequences with motif11.85%
Average Position of motif in Targets96.6 +/- 58.8bp
Average Position of motif in Background99.8 +/- 61.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Atf3/MA0605.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GATCAAGA
GATGACGT
 T A C G C T G A G C A T T A G C G T C A T G C A T A C G C G T A
A T C G C T G A A C G T A C T G C G T A A G T C C T A G G A C T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GATCAAGA---
AGGTCAAGGTCA
 A C G T T A C G C T G A G C A T T A G C G T C A T G C A T A C G C G T A A C G T A C G T A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

TFE3/MA0831.2/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GATCAAGA-
-GTCACGTG
 T A C G C T G A G C A T T A G C G T C A T G C A T A C G C G T A A C G T
A C G T T C A G A C G T A G T C C G T A A G T C T C A G G C A T A C T G

Atf1/MA0604.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GATCAAGA-
-ATGACGTA
 T A C G C T G A G C A T T A G C G T C A T G C A T A C G C G T A A C G T
A C G T T C G A G C A T A C T G C G T A A G T C C T A G G A C T T C G A

Arntl/MA0603.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GATCAAGA--
GGTCACGTGC
 T A C G C T G A G C A T T A G C G T C A T G C A T A C G C G T A A C G T A C G T
C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GATCAAGA---
AGGTCAAGGTCA
 A C G T T A C G C T G A G C A T T A G C G T C A T G C A T A C G C G T A A C G T A C G T A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

Pax2/MA0067.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GATCAAGA
AGTCACGC
 T A C G C T G A G C A T T A G C G T C A T G C A T A C G C G T A
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

MLX/MA0663.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GATCAAGA---
-ATCACGTGAT
 T A C G C T G A G C A T T A G C G T C A T G C A T A C G C G T A A C G T A C G T A C G T
A C G T C T G A G A C T G T A C C G T A G A T C A C T G A G C T C T A G T G C A G A C T

PB0108.1_Atf1_2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GATCAAGA-----
GAATGACGAATAAC
 A C G T T A C G C T G A G C A T T A G C G T C A T G C A T A C G C G T A A C G T A C G T A C G T A C G T A C G T
T A C G C T G A T C G A A C G T C T A G C G T A A G T C C T A G G T C A C T G A A G C T C G T A C G T A G T A C

USF2/MA0526.2/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GATCAAGA-----
CGGGGTCACGTGGCCC
 A C G T A C G T A C G T T A C G C T G A G C A T T A G C G T C A T G C A T A C G C G T A A C G T A C G T A C G T A C G T A C G T
A T G C A T C G C T A G C T A G T C A G G A C T T A G C T C G A A G T C T C A G G A C T A C T G C T A G A G T C A G T C T G A C