Information for 5-GGAATCATCA (Motif 3)

C T A G A C T G C G T A C G T A G C A T A G T C C G T A A G C T A G T C G T C A
Reverse Opposite:
C A G T T C A G C T G A A C G T A C T G C G T A A C G T C G A T T G A C A G T C
p-value:1e-11
log p-value:-2.605e+01
Information Content per bp:1.832
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif3.13%
Number of Background Sequences with motif198.7
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets82.9 +/- 59.4bp
Average Position of motif in Background103.3 +/- 62.2bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GGAATCATCA--
AAGGCGAAATCATCGCA
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G C G T A C G T A G C A T A G T C C G T A A G C T A G T C G T C A A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

PH0017.1_Cux1_2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GGAATCATCA---
TAGTGATCATCATTA
 A C G T A C G T C T A G A C T G C G T A C G T A G C A T A G T C C G T A A G C T A G T C G T C A A C G T A C G T A C G T
G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A

PH0166.1_Six6_2/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GGAATCATCA--
AATAGGGTATCAATATT
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G C G T A C G T A G C A T A G T C C G T A A G C T A G T C G T C A A C G T A C G T
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T

PH0161.1_Six1/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GGAATCATCA--
GATGGGGTATCATTTTT
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G C G T A C G T A G C A T A G T C C G T A A G C T A G T C G T C A A C G T A C G T
C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGAATCATCA
CCAATCAA--
 C T A G A C T G C G T A C G T A G C A T A G T C C G T A A G C T A G T C G T C A
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGAATCATCA-
AGGAAACAGCTG
 A C G T C T A G A C T G C G T A C G T A G C A T A G T C C G T A A G C T A G T C G T C A A C G T
T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G

PB0059.1_Six6_1/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GGAATCATCA--
AATAGGGTATCATATAT
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G C G T A C G T A G C A T A G T C C G T A A G C T A G T C G T C A A C G T A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T

Six3/MA0631.1/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GGAATCATCA--
GATAGGGTATCACTAAT
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G C G T A C G T A G C A T A G T C C G T A A G C T A G T C G T C A A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PH0163.1_Six3/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GGAATCATCA--
GATAGGGTATCACTAAT
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G C G T A C G T A G C A T A G T C C G T A A G C T A G T C G T C A A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PB0142.1_Jundm2_2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GGAATCATCA--
NNGGTGACTCATCANN
 A C G T A C G T A C G T A C G T C T A G A C T G C G T A C G T A G C A T A G T C C G T A A G C T A G T C G T C A A C G T A C G T
C A G T G A C T C A T G T C A G A G C T A C T G C G T A A T G C C A G T T G A C C T G A A G C T G A T C T G C A G T C A A C G T