Information for 5-AATTGGCCAGGA (Motif 5)

G T C A C G T A A C G T C G A T C T A G C T A G A G T C G T A C C G T A A C T G A C T G C T G A
Reverse Opposite:
G A C T G T A C A G T C C G A T C A T G A C T G G A T C A G T C G C T A T G C A G C A T C A G T
p-value:1e-10
log p-value:-2.531e+01
Information Content per bp:1.725
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif9.40%
Number of Background Sequences with motif1713.0
Percentage of Background Sequences with motif3.50%
Average Position of motif in Targets86.0 +/- 45.6bp
Average Position of motif in Background98.8 +/- 53.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AATTGGCCAGGA
TGATTGGCTANN-
 A C G T G T C A C G T A A C G T C G A T C T A G C T A G A G T C G T A C C G T A A C T G A C T G C T G A
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AATTGGCCAGGA-
-TYTGACCASWRG
 G T C A C G T A A C G T C G A T C T A G C T A G A G T C G T A C C G T A A C T G A C T G C T G A A C G T
A C G T G A C T A G T C C G A T A C T G C T G A T G A C G T A C C G T A A T C G G C A T C T G A C T A G

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AATTGGCCAGGA
CCGATTGGCT----
 A C G T A C G T G T C A C G T A A C G T C G A T C T A G C T A G A G T C G T A C C G T A A C T G A C T G C T G A
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AATTGGCCAGGA-
---TGCCCAGNHW
 G T C A C G T A A C G T C G A T C T A G C T A G A G T C G T A C C G T A A C T G A C T G C T G A A C G T
A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AATTGGCCAGGA
-NTTGGCANN--
 G T C A C G T A A C G T C G A T C T A G C T A G A G T C G T A C C G T A A C T G A C T G C T G A
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:AATTGGCCAGGA---
-----ANCAGGATGT
 G T C A C G T A A C G T C G A T C T A G C T A G A G T C G T A C C G T A A C T G A C T G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AATTGGCCAGGA-
NNAATTAGTCACGGT
 A C G T A C G T G T C A C G T A A C G T C G A T C T A G C T A G A G T C G T A C C G T A A C T G A C T G C T G A A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AATTGGCCAGGA
NNTTGGCANN--
 G T C A C G T A A C G T C G A T C T A G C T A G A G T C G T A C C G T A A C T G A C T G C T G A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AATTGGCCAGGA-
--NNTGCCAAGNN
 G T C A C G T A A C G T C G A T C T A G C T A G A G T C G T A C C G T A A C T G A C T G C T G A A C G T
A C G T A C G T G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AATTGGCCAGGA-
AAWCTAGGTCARDNN
 A C G T A C G T G T C A C G T A A C G T C G A T C T A G C T A G A G T C G T A C C G T A A C T G A C T G C T G A A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A