Information for 13-CCAGCCTG (Motif 19)

G T A C G T A C C G T A A C T G A T G C A G T C A G C T C T A G
Reverse Opposite:
A G T C C T G A A C T G A T C G A G T C A C G T A C T G A C T G
p-value:1e-7
log p-value:-1.809e+01
Information Content per bp:1.897
Number of Target Sequences with motif161.0
Percentage of Target Sequences with motif24.66%
Number of Background Sequences with motif7485.6
Percentage of Background Sequences with motif16.12%
Average Position of motif in Targets101.0 +/- 60.2bp
Average Position of motif in Background98.7 +/- 61.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CCAGCCTG
BCAGACWA
 G T A C G T A C C G T A A C T G A T G C A G T C A G C T C T A G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCAGCCTG
CCAGACAG
 G T A C G T A C C G T A A C T G A T G C A G T C A G C T C T A G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CCAGCCTG--
----GCTGTG
 G T A C G T A C C G T A A C T G A T G C A G T C A G C T C T A G A C G T A C G T
A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCAGCCTG
-CAGCC--
 G T A C G T A C C G T A A C T G A T G C A G T C A G C T C T A G
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCCTG
DCTCAGCAGG
 A C G T A C G T G T A C G T A C C G T A A C T G A T G C A G T C A G C T C T A G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCAGCCTG
TGCCCAGNHW-
 A C G T A C G T A C G T G T A C G T A C C G T A A C T G A T G C A G T C A G C T C T A G
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCAGCCTG--
CCAGACRSVB
 G T A C G T A C C G T A A C T G A T G C A G T C A G C T C T A G A C G T A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCAGCCTG---
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T G T A C G T A C C G T A A C T G A T G C A G T C A G C T C T A G A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCAGCCTG
ATGCCAGACN-
 A C G T A C G T A C G T G T A C G T A C C G T A A C T G A T G C A G T C A G C T C T A G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCAGCCTG----
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C C G T A A C T G A T G C A G T C A G C T C T A G A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A