Information for 12-GAGCCTAGACAA (Motif 8)

A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A C G T A
Reverse Opposite:
A C G T C G A T C T A G A C G T A G T C C G A T C G T A C T A G A C T G G T A C C G A T A G T C
p-value:1e-19
log p-value:-4.502e+01
Information Content per bp:1.938
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets88.7 +/- 49.9bp
Average Position of motif in Background138.0 +/- 52.0bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD3/MA0795.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GAGCCTAGACAA
-CGTCTAGACA-
 A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A C G T A
A C G T G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T

Smad4/MA1153.1/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GAGCCTAGACAA
---TCTAGACA-
 A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A C G T A
A C G T A C G T A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GAGCCTAGACAA
----BCAGACWA
 A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A C G T A
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAGCCTAGACAA----
CAAATCCAGACATCACA
 A C G T A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GAGCCTAGACAA
----CCAGACAG
 A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A C G T A
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

FOXF2/MA0030.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAGCCTAGACAA-
CAAACGTAAACAAT
 A C G T A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C G T
A G T C G T C A G C T A C G T A T A G C C T A G A C G T C G T A C G T A C G T A A G T C C G T A G C T A C G A T

SRY/MA0084.1/Jaspar

Match Rank:7
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GAGCCTAGACAA-
----GTAAACAAT
 A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GAGCCTAGACAA------
---CTCACACAATGGCGC
 A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GAGCCTAGACAA------
--AAACAGACAAAGGAAT
 A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GAGCCTAGACAA--
----CCAGACRSVB
 A C T G C G T A A C T G A G T C A G T C A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C