Information for 8-AGCAGCAG (Motif 19)

G T C A C A T G A G T C C G T A A C T G A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A G T C A C G T A C T G G T A C A C G T
p-value:1e-3
log p-value:-8.570e+00
Information Content per bp:1.918
Number of Target Sequences with motif61.0
Percentage of Target Sequences with motif6.30%
Number of Background Sequences with motif1819.0
Percentage of Background Sequences with motif3.87%
Average Position of motif in Targets95.4 +/- 51.2bp
Average Position of motif in Background102.3 +/- 57.6bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:AGCAGCAG
ANCAGCTG
 G T C A C A T G A G T C C G T A A C T G A G T C C G T A A C T G
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AGCAGCAG----
AGCAGCTGCTNN
 G T C A C A T G A G T C C G T A A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

ASCL1/MA1100.1/Jaspar

Match Rank:3
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--AGCAGCAG---
GCAGCAGCTGGCG
 A C G T A C G T G T C A C A T G A G T C C G T A A C T G A G T C C G T A A C T G A C G T A C G T A C G T
T A C G T A G C C T G A T C A G T A G C C G T A A T C G T A G C A C G T A T C G A T C G A T G C T A C G

Ascl2/MA0816.1/Jaspar

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AGCAGCAG--
AGCAGCTGCT
 G T C A C A T G A G T C C G T A A C T G A G T C C G T A A C T G A C G T A C G T
C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:5
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AGCAGCAG
AACAGCTG
 G T C A C A T G A G T C C G T A A C T G A G T C C G T A A C T G
T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGCAG-
CAGCAGCTGN
 A C G T G T C A C A T G A G T C C G T A A C T G A G T C C G T A A C T G A C G T
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

TFAP4/MA0691.1/Jaspar

Match Rank:7
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AGCAGCAG--
AACAGCTGAT
 G T C A C A T G A G T C C G T A A C T G A G T C C G T A A C T G A C G T A C G T
T G C A G C T A A G T C G T C A A T C G T A G C G A C T A T C G C G T A A G C T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AGCAGCAG----
CACAGCAGGGGG
 G T C A C A T G A G T C C G T A A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGCAG-
DCTCAGCAGG
 A C G T G T C A C A T G A G T C C G T A A C T G A G T C C G T A A C T G A C G T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:10
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-AGCAGCAG-
BAACAGCTGT
 A C G T G T C A C A T G A G T C C G T A A C T G A G T C C G T A A C T G A C G T
A C G T T C G A T C G A A G T C G T C A T A C G A T G C A C G T A C T G A G C T