Information for 4-CATTTTTCACGT (Motif 3)

A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C A C T G A C G T
Reverse Opposite:
C G T A A G T C A C T G A C G T A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C T G
p-value:1e-18
log p-value:-4.154e+01
Information Content per bp:1.963
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif4.41%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets82.2 +/- 52.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CATTTTTCACGT-
TTTTTTTTCNNGTN
 A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C A C T G A C G T A C G T
G A C T G C A T C A G T C G A T A G C T A G C T G C A T G C A T A G T C T G A C G T C A A C T G G A C T C G T A

NFAT5/MA0606.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CATTTTTCACGT
-ATTTTCCATT-
 A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C A C T G A C G T
A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CATTTTTCACGT
--TTTTCCA---
 A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C A C T G A C G T
A C G T A C G T C G A T A C G T G A C T A C G T G T A C A G T C G C T A A C G T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CATTTTTCACGT
-ATTTTCCATT-
 A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C A C T G A C G T
A C G T C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CATTTTTCACGT------
-NANTTTCAAGTGGTTAN
 A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CATTTTTCACGT
NCCATTGTTC----
 A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C A C T G A C G T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CATTTTTCACGT
TCATCAATCA---
 A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C A C T G A C G T
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:8
Score:0.59
Offset:6
Orientation:forward strand
Alignment:CATTTTTCACGT----
------GCACGTACCC
 A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

Id2/MA0617.1/Jaspar

Match Rank:9
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:CATTTTTCACGT--
------TCACGTGC
 A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A G T C C G T A A G T C A C T G A C G T A C T G A G T C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CATTTTTCACGT-
NNAATTAGTCACGGT
 A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C A C T G A C G T A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T