Information for 11-RACAGACASAGA (Motif 17)

T C A G G T C A A T G C G C T A T A C G C G T A T A G C T G C A A T G C C G T A T A C G G C T A
Reverse Opposite:
C G A T A T G C G C A T T A C G A C G T A T C G G C A T A T G C C G A T T A C G C A G T A G T C
p-value:1e-5
log p-value:-1.207e+01
Information Content per bp:1.467
Number of Target Sequences with motif104.0
Percentage of Target Sequences with motif15.14%
Number of Background Sequences with motif4572.0
Percentage of Background Sequences with motif9.77%
Average Position of motif in Targets85.9 +/- 57.4bp
Average Position of motif in Background99.1 +/- 84.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.57
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-RACAGACASAGA---
AAACAGACAAAGGAAT
 A C G T T C A G G T C A A T G C G C T A T A C G C G T A T A G C T G C A A T G C C G T A T A C G G C T A A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:RACAGACASAGA
GAAAGTGAAAGT
 T C A G G T C A A T G C G C T A T A C G C G T A T A G C T G C A A T G C C G T A T A C G G C T A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

SOX10/MA0442.2/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:RACAGACASAGA-
--AAAACAAAGAA
 T C A G G T C A A T G C G C T A T A C G C G T A T A G C T G C A A T G C C G T A T A C G G C T A A C G T
A C G T A C G T C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:RACAGACASAGA
GAAAGTGAAAGT
 T C A G G T C A A T G C G C T A T A C G C G T A T A G C T G C A A T G C C G T A T A C G G C T A
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----RACAGACASAGA
AGGTGNCAGACAG---
 A C G T A C G T A C G T A C G T T C A G G T C A A T G C G C T A T A C G C G T A T A G C T G C A A T G C C G T A T A C G G C T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:RACAGACASAGA
GAAACTGAAACT
 T C A G G T C A A T G C G C T A T A C G C G T A T A G C T G C A A T G C C G T A T A C G G C T A
T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T

MF0005.1_Forkhead_class/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:RACAGACASAGA
-AAATAAACA--
 T C A G G T C A A T G C G C T A T A C G C G T A T A G C T G C A A T G C C G T A T A C G G C T A
A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----RACAGACASAGA
AGGTGHCAGACA----
 A C G T A C G T A C G T A C G T T C A G G T C A A T G C G C T A T A C G C G T A T A G C T G C A A T G C C G T A T A C G G C T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:RACAGACASAGA
--AAAACAAAGG
 T C A G G T C A A T G C G C T A T A C G C G T A T A G C T G C A A T G C C G T A T A C G G C T A
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

PB0016.1_Foxj1_1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--RACAGACASAGA--
AAAGTAAACAAAAATT
 A C G T A C G T T C A G G T C A A T G C G C T A T A C G C G T A T A G C T G C A A T G C C G T A T A C G G C T A A C G T A C G T
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T