Information for 4-CTTGCCYTAT (Motif 8)

A G T C A C G T A C G T A C T G G T A C A G T C G A T C A C G T C G T A A G C T
Reverse Opposite:
C T G A A C G T C G T A C T A G C T A G A C T G A G T C C G T A C G T A A C T G
p-value:1e-10
log p-value:-2.351e+01
Information Content per bp:1.855
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif20.51%
Number of Background Sequences with motif270.2
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets89.1 +/- 52.3bp
Average Position of motif in Background97.0 +/- 63.7bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---CTTGCCYTAT
NNACTTGCCTT--
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G G T A C A G T C G A T C A C G T C G T A A G C T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTTGCCYTAT
TGACCTTGACCT--
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G G T A C A G T C G A T C A C G T C G T A A G C T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTTGCCYTAT
-TTGACTTTT
 A G T C A C G T A C G T A C T G G T A C A G T C G A T C A C G T C G T A A G C T
A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTTGCCYTAT-
-TTGCAACATN
 A G T C A C G T A C G T A C T G G T A C A G T C G A T C A C G T C G T A A G C T A C G T
A C G T C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CTTGCCYTAT
TGACCTTGACCT--
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G G T A C A G T C G A T C A C G T C G T A A G C T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T

CEBPA/MA0102.3/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTTGCCYTAT-
ATTGCACAATA
 A G T C A C G T A C G T A C T G G T A C A G T C G A T C A C G T C G T A A G C T A C G T
T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A

CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTTGCCYTAT
GTTGCGCAAT
 A G T C A C G T A C G T A C T G G T A C A G T C G A T C A C G T C G T A A G C T
T C A G A G C T A C G T C T A G G A T C C T A G G A T C G T C A C T G A A C G T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTTGCCYTAT---
-RTGATTKATRGN
 A G T C A C G T A C G T A C T G G T A C A G T C G A T C A C G T C G T A A G C T A C G T A C G T A C G T
A C G T C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C

RORA(var.2)/MA0072.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTTGCCYTAT-----
-TTGACCTANTTATN
 A G T C A C G T A C G T A C T G G T A C A G T C G A T C A C G T C G T A A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTTGCCYTAT----
--TGATTTATGGCC
 A G T C A C G T A C G T A C T G G T A C A G T C G A T C A C G T C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C