Information for 4-AGCCTCTCCA (Motif 4)

C G T A A C T G A G T C A G T C A C G T A G T C A C G T A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G C G T A A C T G C G T A A C T G A C T G A G T C A C G T
p-value:1e0
log p-value:-1.792e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets25.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGCCTCTCCA-
AGCCACTCAAG
 C G T A A C T G A G T C A G T C A C G T A G T C A C G T A G T C A G T C C G T A A C G T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

SRSF2(RRM)/Homo_sapiens-RNCMPT00072-PBM/HughesRNA

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AGCCTCTCCA
--CNTCTCCT
 C G T A A C T G A G T C A G T C A C G T A G T C A C G T A G T C A G T C C G T A
A C G T A C G T A G T C G A T C G C A T A G T C C G A T A G T C A G T C A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGCCTCTCCA-
-NSCACTYVAV
 C G T A A C T G A G T C A G T C A C G T A G T C A C G T A G T C A G T C C G T A A C G T
A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

CRZ1(MacIsaac)/Yeast

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AGCCTCTCCA
CAGCCAC----
 A C G T C G T A A C T G A G T C A G T C A C G T A G T C A C G T A G T C A G T C C G T A
A G T C C G T A A C T G A G T C A G T C C G A T A G T C A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGCCTCTCCA
AASCACTCAA
 C G T A A C T G A G T C A G T C A C G T A G T C A C G T A G T C A G T C C G T A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

CRZ1/MA0285.1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGCCTCTCCA
CTAAGCCAC----
 A C G T A C G T A C G T C G T A A C T G A G T C A G T C A C G T A G T C A C G T A G T C A G T C C G T A
T G A C G C A T T G C A G T C A A C T G A G T C A G T C G T C A A G T C A C G T A C G T A C G T A C G T

CRZ1/MA0285.1/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGCCTCTCCA
CTAAGCCAC----
 A C G T A C G T A C G T C G T A A C T G A G T C A G T C A C G T A G T C A C G T A G T C A G T C C G T A
T G A C G C A T T G C A G T C A A C T G A G T C A G T C G T C A A G T C A C G T A C G T A C G T A C G T

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AGCCTCTCCA
-CTCTCTCY-
 C G T A A C T G A G T C A G T C A C G T A G T C A C G T A G T C A G T C C G T A
A C G T A G T C A G C T A G T C A C G T A G T C A G C T A G T C G A T C A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGCCTCTCCA-
-RSCACTYRAG
 C G T A A C T G A G T C A G T C A C G T A G T C A C G T A G T C A G T C C G T A A C G T
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

Pp_0237(RRM)/Physcomitrella_patens-RNCMPT00237-PBM/HughesRNA

Match Rank:10
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:AGCCTCTCCA--
----ACTCCATC
 C G T A A C T G A G T C A G T C A C G T A G T C A C G T A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A T C A C G T A G T C A G T C C G T A C G A T G T A C