Information for 10-CATGCCAASAAA (Motif 13)

A T G C C G T A A C G T T C A G T G A C A G T C C G T A C G T A T A G C G C T A C T G A G T C A
Reverse Opposite:
A C G T G A C T C G A T A T C G C G A T A C G T T C A G A C T G A G T C G T C A C G A T A T C G
p-value:1e-11
log p-value:-2.655e+01
Information Content per bp:1.722
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.89%
Number of Background Sequences with motif199.0
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets104.9 +/- 49.9bp
Average Position of motif in Background106.6 +/- 59.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CATGCCAASAAA
GGTGCCAAGT--
 A T G C C G T A A C G T T C A G T G A C A G T C C G T A C G T A T A G C G C T A C T G A G T C A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CATGCCAASAAA
NNTGCCAAGNN-
 A T G C C G T A A C G T T C A G T G A C A G T C C G T A C G T A T A G C G C T A C T G A G T C A
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CATGCCAASAAA
-ATGCCAACC--
 A T G C C G T A A C G T T C A G T G A C A G T C C G T A C G T A T A G C G C T A C T G A G T C A
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CATGCCAASAAA--
ACTATGCCAACCTACC
 A C G T A C G T A T G C C G T A A C G T T C A G T G A C A G T C C G T A C G T A T A G C G C T A C T G A G T C A A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CATGCCAASAAA
CGTGCCAAG---
 A T G C C G T A A C G T T C A G T G A C A G T C C G T A C G T A T A G C G C T A C T G A G T C A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CATGCCAASAAA
TTGCCATGGCAACC--
 A C G T A C G T A C G T A C G T A T G C C G T A A C G T T C A G T G A C A G T C C G T A C G T A T A G C G C T A C T G A G T C A
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CATGCCAASAAA
-TTGCCAAG---
 A T G C C G T A A C G T T C A G T G A C A G T C C G T A C G T A T A G C G C T A C T G A G T C A
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CATGCCAASAAA
GTTGCCATGGCAAC---
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C G T T C A G T G A C A G T C C G T A C G T A T A G C G C T A C T G A G T C A
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CATGCCAASAAA
SCCTAGCAACAG-
 A C G T A T G C C G T A A C G T T C A G T G A C A G T C C G T A C G T A T A G C G C T A C T G A G T C A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CATGCCAASAAA
TTGCCATGGCAACN--
 A C G T A C G T A C G T A C G T A T G C C G T A A C G T T C A G T G A C A G T C C G T A C G T A T A G C G C T A C T G A G T C A
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T