Information for 15-GCCAAGCGAG (Motif 18)

A C T G A G T C G T A C G T C A C T G A A T C G A G T C A T C G C G T A A C T G
Reverse Opposite:
A G T C C G A T A T G C T A C G A T G C A G C T A C G T A C T G A C T G G T A C
p-value:1e-8
log p-value:-2.064e+01
Information Content per bp:1.856
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif98.9
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets129.0 +/- 51.0bp
Average Position of motif in Background97.2 +/- 63.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GCCAAGCGAG
NNTGCCAAGNN--
 A C G T A C G T A C G T A C T G A G T C G T A C G T C A C T G A A T C G A G T C A T C G C G T A A C T G
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGCGAG
CGTGCCAAG----
 A C G T A C G T A C G T A C T G A G T C G T A C G T C A C T G A A T C G A G T C A T C G C G T A A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGCGAG
GGTGCCAAGT---
 A C G T A C G T A C G T A C T G A G T C G T A C G T C A C T G A A T C G A G T C A T C G C G T A A C T G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

PB0147.1_Max_2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCCAAGCGAG--
GTGCCACGCGACTG
 A C G T A C G T A C T G A G T C G T A C G T C A C T G A A T C G A G T C A T C G C G T A A C T G A C G T A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCCAAGCGAG
TTGCCAAG----
 A C G T A C G T A C T G A G T C G T A C G T C A C T G A A T C G A G T C A T C G C G T A A C T G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGCGAG---
GCAGCCAAGCGTGACN
 A C G T A C G T A C G T A C T G A G T C G T A C G T C A C T G A A T C G A G T C A T C G C G T A A C T G A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCCAAGCGAG
ATGCCAACC---
 A C G T A C G T A C T G A G T C G T A C G T C A C T G A A T C G A G T C A T C G C G T A A C T G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GCCAAGCGAG--
SCAGYCADGCATGAC
 A C G T A C G T A C G T A C T G A G T C G T A C G T C A C T G A A T C G A G T C A T C G C G T A A C T G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GCCAAGCGAG-
ACTATGCCAACCTACC
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C G T A C G T C A C T G A A T C G A G T C A T C G C G T A A C T G A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCCAAGCGAG
AGCCAATCGG-
 A C G T A C T G A G T C G T A C G T C A C T G A A T C G A G T C A T C G C G T A A C T G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T