Information for 20-AATAGTCTGG (Motif 22)

C G T A G T C A A C G T C G T A C T A G A C G T A G T C A C G T A C T G C T A G
Reverse Opposite:
A G T C A G T C C G T A A C T G C G T A A G T C A C G T C G T A A C G T A C G T
p-value:1e-7
log p-value:-1.673e+01
Information Content per bp:1.913
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif59.3
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets110.6 +/- 36.5bp
Average Position of motif in Background92.3 +/- 53.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:AATAGTCTGG
--TWGTCTGV
 C G T A G T C A A C G T C G T A C T A G A C G T A G T C A C G T A C T G C T A G
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.70
Offset:3
Orientation:forward strand
Alignment:AATAGTCTGG---
---GGTCTGGCAT
 C G T A G T C A A C G T C G T A C T A G A C G T A G T C A C G T A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AATAGTCTGG
--CTGTCTGG
 C G T A G T C A A C G T C G T A C T A G A C G T A G T C A C G T A C T G C T A G
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AATAGTCTGG
VBSYGTCTGG
 C G T A G T C A A C G T C G T A C T A G A C G T A G T C A C G T A C T G C T A G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PB0185.1_Tcf1_2/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AATAGTCTGG----
NNTAATCCNGNCNN
 C G T A G T C A A C G T C G T A C T A G A C G T A G T C A C G T A C T G C T A G A C G T A C G T A C G T A C G T
G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

Smad4/MA1153.1/Jaspar

Match Rank:6
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AATAGTCTGG-
---TGTCTAGA
 C G T A G T C A A C G T C G T A C T A G A C G T A G T C A C G T A C T G C T A G A C G T
A C G T A C G T A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AATAGTCTGG-----
NNTNNTGTCTGGNNTNG
 A C G T A C G T C G T A G T C A A C G T C G T A C T A G A C G T A G T C A C G T A C T G C T A G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

OTX1/MA0711.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AATAGTCTGG
-TTAATCCG-
 C G T A G T C A A C G T C G T A C T A G A C G T A G T C A C G T A C T G C T A G
A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AATAGTCTGG----
NNNATTAATCCGNTTNA
 A C G T A C G T A C G T C G T A G T C A A C G T C G T A C T A G A C G T A G T C A C G T A C T G C T A G A C G T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AATAGTCTGG----
NNNATTAATCCGNTTNA
 A C G T A C G T A C G T C G T A G T C A A C G T C G T A C T A G A C G T A G T C A C G T A C T G C T A G A C G T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A