Information for 5-TTTTATGGGC (Motif 3)

A G C T A G C T C G A T C G A T T G C A A G C T C A T G C T A G A T C G T G A C
Reverse Opposite:
A C T G T A G C G A T C G T A C T C G A A C G T G C T A C G T A T C G A T C G A
p-value:1e-24
log p-value:-5.598e+01
Information Content per bp:1.661
Number of Target Sequences with motif158.0
Percentage of Target Sequences with motif20.79%
Number of Background Sequences with motif4158.0
Percentage of Background Sequences with motif8.62%
Average Position of motif in Targets98.8 +/- 53.6bp
Average Position of motif in Background99.0 +/- 59.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:TTTTATGGGC
TTTTATTRGN
 A G C T A G C T C G A T C G A T T G C A A G C T C A T G C T A G A T C G T G A C
C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C

HOXD13/MA0909.1/Jaspar

Match Rank:2
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGGGC
NTTTTATTGG-
 A C G T A G C T A G C T C G A T C G A T T G C A A G C T C A T G C T A G A T C G T G A C
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGGGC
NTTTTATTGG-
 A C G T A G C T A G C T C G A T C G A T T G C A A G C T C A T G C T A G A T C G T G A C
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.89
Offset:0
Orientation:forward strand
Alignment:TTTTATGGGC
TTTTATGGCM
 A G C T A G C T C G A T C G A T T G C A A G C T C A T G C T A G A T C G T G A C
C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C

HOXA13/MA0650.1/Jaspar

Match Rank:5
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGGGC
TTTTTATTGG-
 A C G T A G C T A G C T C G A T C G A T T G C A A G C T C A T G C T A G A T C G T G A C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:6
Score:0.89
Offset:0
Orientation:forward strand
Alignment:TTTTATGGGC
TTTTATKRGG
 A G C T A G C T C G A T C G A T T G C A A G C T C A T G C T A G A T C G T G A C
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:TTTTATGGGC
TTTTATGGCB
 A G C T A G C T C G A T C G A T T G C A A G C T C A T G C T A G A T C G T G A C
G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGGGC
NTTTTATDRG-
 A C G T A G C T A G C T C G A T C G A T T G C A A G C T C A T G C T A G A T C G T G A C
C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:TTTTATGGGC
TTTTATTGC-
 A G C T A G C T C G A T C G A T T G C A A G C T C A T G C T A G A T C G T G A C
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:TTTTATGGGC
TTTAATTGCN
 A G C T A G C T C G A T C G A T T G C A A G C T C A T G C T A G A T C G T G A C
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C