Information for 12-TAGRCAGA (Motif 24)

A C G T C G T A A C T G T C G A A G T C C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C T G A G C T A G T C A C G T C G T A
p-value:1e-14
log p-value:-3.231e+01
Information Content per bp:1.933
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif7.13%
Number of Background Sequences with motif548.0
Percentage of Background Sequences with motif1.52%
Average Position of motif in Targets97.2 +/- 60.3bp
Average Position of motif in Background102.4 +/- 62.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.34
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4/MA1153.1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TAGRCAGA
TCTAGACA--
 A C G T A C G T A C G T C G T A A C T G T C G A A G T C C G T A A C T G C G T A
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TAGRCAGA--
ATGCCAGACN
 A C G T C G T A A C T G T C G A A G T C C G T A A C T G C G T A A C G T A C G T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TAGRCAGA
BCAGACWA-
 A C G T A C G T C G T A A C T G T C G A A G T C C G T A A C T G C G T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TAGRCAGA
CCAGACAG-
 A C G T A C G T C G T A A C T G T C G A A G T C C G T A A C T G C G T A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TAGRCAGA
CGTCTAGACA--
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G T C G A A G T C C G T A A C T G C G T A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TAGRCAGA
TTGACAGC
 A C G T C G T A A C T G T C G A A G T C C G T A A C T G C G T A
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

FOXP1/MA0481.2/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TAGRCAGA-
AAGTAAACAGAA
 A C G T A C G T A C G T A C G T C G T A A C T G T C G A A G T C C G T A A C T G C G T A A C G T
T C G A C G T A C T A G G A C T T G C A G T C A C T G A G A T C C G T A T C A G C G T A G C T A

FOXP2/MA0593.1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TAGRCAGA
AAGTAAACAAA
 A C G T A C G T A C G T A C G T C G T A A C T G T C G A A G T C C G T A A C T G C G T A
C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TAGRCAGA-----
---CCAGACRSVB
 A C G T C G T A A C T G T C G A A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

NEUROD1/MA1109.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TAGRCAGA------
-GGACAGATGGCAG
 A C G T C G T A A C T G T C G A A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G T C A G T C G A T G A C C G T A A C T G T G C A G C A T C A T G A C T G A G T C T C G A T A C G