Information for 9-ATCAAYCCGAGT (Motif 4)

C G T A A C G T A T G C C G T A G C T A A G T C A G T C T G A C A C T G C G T A C A T G A C G T
Reverse Opposite:
G T C A G T A C A C G T A G T C A C T G C T A G T C A G C G A T A C G T A T C G C G T A A C G T
p-value:1e-58
log p-value:-1.343e+02
Information Content per bp:1.736
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.94%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets94.6 +/- 59.3bp
Average Position of motif in Background107.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0016.1_Cux1_1/Jaspar

Match Rank:1
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------ATCAAYCCGAGT
TNAGNTGATCAACCGGT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A T G C C G T A G C T A A G T C A G T C T G A C A C T G C G T A C A T G A C G T
G A C T T A G C G C T A A T C G C A T G C G A T C T A G C G T A A G C T G A T C C G T A C T G A A G T C A G T C C T A G T A C G G A C T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ATCAAYCCGAGT
CCATCAATCAAA--
 A C G T A C G T C G T A A C G T A T G C C G T A G C T A A G T C A G T C T G A C A C T G C G T A C A T G A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---ATCAAYCCGAGT
CTAATTAA-------
 A C G T A C G T A C G T C G T A A C G T A T G C C G T A G C T A A G T C A G T C T G A C A C T G C G T A C A T G A C G T
A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--ATCAAYCCGAGT
TCATCAATCA----
 A C G T A C G T C G T A A C G T A T G C C G T A G C T A A G T C A G T C T G A C A C T G C G T A C A T G A C G T
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---ATCAAYCCGAGT
GCCATAAATCA----
 A C G T A C G T A C G T C G T A A C G T A T G C C G T A G C T A A G T C A G T C T G A C A C T G C G T A C A T G A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:ATCAAYCCGAGT
ATTAAA------
 C G T A A C G T A T G C C G T A G C T A A G T C A G T C T G A C A C T G C G T A C A T G A C G T
C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---ATCAAYCCGAGT
CCAATCAA-------
 A C G T A C G T A C G T C G T A A C G T A T G C C G T A G C T A A G T C A G T C T G A C A C T G C G T A C A T G A C G T
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----ATCAAYCCGAGT
HNRAATCAAT------
 A C G T A C G T A C G T A C G T C G T A A C G T A T G C C G T A G C T A A G T C A G T C T G A C A C T G C G T A C A T G A C G T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----ATCAAYCCGAGT
RGCCATYAATCA----
 A C G T A C G T A C G T A C G T C G T A A C G T A T G C C G T A G C T A A G T C A G T C T G A C A C T G C G T A C A T G A C G T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:ATCAAYCCGAGT---
-TTGCCCGGATTAGG
 C G T A A C G T A T G C C G T A G C T A A G T C A G T C T G A C A C T G C G T A C A T G A C G T A C G T A C G T A C G T
A C G T C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G