Information for 24-AYAWAATATATA (Motif 20)

C G T A G A C T T G C A G C T A C G T A G C T A C G A T C G T A G A C T C T G A G A C T C T G A
Reverse Opposite:
G A C T C T G A G A C T C T G A G C A T C G T A C G A T C G A T C G A T A C G T C T G A G C A T
p-value:1e-7
log p-value:-1.744e+01
Information Content per bp:1.620
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif5.59%
Number of Background Sequences with motif713.4
Percentage of Background Sequences with motif1.62%
Average Position of motif in Targets102.4 +/- 55.9bp
Average Position of motif in Background100.2 +/- 56.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)3.36
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0080.1_Tbp_1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AYAWAATATATA----
TCTTTATATATAAATA
 C G T A G A C T T G C A G C T A C G T A G C T A C G A T C G T A G A C T C T G A G A C T C T G A A C G T A C G T A C G T A C G T
A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A

POU4F1/MA0790.1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AYAWAATATATA-
CATTAATTATTCAT
 A C G T C G T A G A C T T G C A G C T A C G T A G C T A C G A T C G T A G A C T C T G A G A C T C T G A A C G T
G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T

ONECUT3/MA0757.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AYAWAATATATA--
AAAAAATCAATAAT
 C G T A G A C T T G C A G C T A C G T A G C T A C G A T C G T A G A C T C T G A G A C T C T G A A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

ONECUT1/MA0679.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AYAWAATATATA--
AAAAAATCGATAAT
 C G T A G A C T T G C A G C T A C G T A G C T A C G A T C G T A G A C T C T G A G A C T C T G A A C G T A C G T
T G C A C T G A C G T A G C T A C T G A C T G A A C G T A G T C C T A G C G T A G A C T C G T A G C T A G A C T

ONECUT2/MA0756.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AYAWAATATATA--
AAAAAATCGATAAT
 C G T A G A C T T G C A G C T A C G T A G C T A C G A T C G T A G A C T C T G A G A C T C T G A A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T

POU4F3/MA0791.1/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AYAWAATATATA-
CTCATTAATTATGCAT
 A C G T A C G T A C G T C G T A G A C T T G C A G C T A C G T A G C T A C G A T C G T A G A C T C T G A G A C T C T G A A C G T
A G T C C A G T G T A C C T G A G A C T G C A T G C T A G C T A G C A T G C A T G C T A C G A T C A T G G A T C T C G A G A C T

PH0075.1_Hoxd10/Jaspar

Match Rank:7
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------AYAWAATATATA
AATGCAATAAAATTTAT-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T T G C A G C T A C G T A G C T A C G A T C G T A G A C T C T G A G A C T C T G A
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T

NFIL3/MA0025.1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AYAWAATATATA-
--ANGTTACATAA
 C G T A G A C T T G C A G C T A C G T A G C T A C G A T C G T A G A C T C T G A G A C T C T G A A C G T
A C G T A C G T C G T A A G C T T C A G A G C T A C G T C G T A A G T C C T G A C G A T G T C A C G T A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AYAWAATATATA---
-----ATGMATATDC
 C G T A G A C T T G C A G C T A C G T A G C T A C G A T C G T A G A C T C T G A G A C T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PH0046.1_Hoxa10/Jaspar

Match Rank:10
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------AYAWAATATATA
TAGGTAATAAAATTCA--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T T G C A G C T A C G T A G C T A C G A T C G T A G A C T C T G A G A C T C T G A
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A A C G T A C G T