Information for 20-TGGAGATTTCAA (Motif 18)

A C G T A C T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A C G T A
Reverse Opposite:
A C G T C G A T A C T G C G T A C G T A C G T A A C G T A G T C A C G T A G T C A G T C C G T A
p-value:1e-28
log p-value:-6.499e+01
Information Content per bp:1.976
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.40%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets91.3 +/- 46.9bp
Average Position of motif in Background86.5 +/- 72.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0126.1_Gata5_2/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TGGAGATTTCAA---
GACAGAGATATCAGTGT
 A C G T A C G T A C G T A C T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TGGAGATTTCAA-
---CGGTTTCAAA
 A C G T A C T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A C G T A A C G T
A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

Gfi1/MA0038.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGGAGATTTCAA
CNGTGATTTN--
 A C G T A C T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A C G T A
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGGAGATTTCAA---
TNNNATGATTTCNNCNN
 A C G T A C G T A C G T A C T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C G T
A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TGGAGATTTCAA
-GGGGATTTCC-
 A C G T A C T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A C G T A
A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

LIN54/MA0619.1/Jaspar

Match Rank:6
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TGGAGATTTCAA--
-----ATTTGAATT
 A C G T A C T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TGGAGATTTCAA-
---TGGTTTCAGT
 A C G T A C T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A C G T A A C G T
A C G T A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TGGAGATTTCAA
-GGGAATTTCC-
 A C G T A C T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A C G T A
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TGGAGATTTCAA
NGGGGATTTCCC
 A C G T A C T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A C G T A
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGGAGATTTCAA
ATGCATAATTCA-
 A C G T A C G T A C T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A G T C C G T A C G T A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T