Information for 9-GACAGAAKCATT (Motif 3)

T A C G C T G A A T G C C T G A A C T G G C T A C G T A A C T G G T A C C G T A A C G T A G C T
Reverse Opposite:
C T G A C G T A C G A T A C T G G T A C A C G T C A G T A G T C A G C T A T C G A G C T A G T C
p-value:1e-73
log p-value:-1.693e+02
Information Content per bp:1.904
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif6.88%
Number of Background Sequences with motif24.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets109.0 +/- 56.2bp
Average Position of motif in Background111.5 +/- 77.9bp
Strand Bias (log2 ratio + to - strand density)4.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0050.1_Osr1_1/Jaspar

Match Rank:1
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GACAGAAKCATT-
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T T A C G C T G A A T G C C T G A A C T G G C T A C G T A A C T G G T A C C G T A A C G T A G C T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

MF0010.1_Homeobox_class/Jaspar

Match Rank:2
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GACAGAAKCATT
-----AATTATT
 T A C G C T G A A T G C C T G A A C T G G C T A C G T A A C T G G T A C C G T A A C G T A G C T
A C G T A C G T A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T

PB0051.1_Osr2_1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GACAGAAKCATT-
ATGTACAGTAGCAAAG
 A C G T A C G T A C G T T A C G C T G A A T G C C T G A A C T G G C T A C G T A A C T G G T A C C G T A A C G T A G C T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

Sox1/MA0870.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GACAGAAKCATT---
AACAATAACATTGTT
 T A C G C T G A A T G C C T G A A C T G G C T A C G T A A C T G G T A C C G T A A C G T A G C T A C G T A C G T A C G T
T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GACAGAAKCATT-
ADGGYAGYAGCATCT
 A C G T A C G T T A C G C T G A A T G C C T G A A C T G G C T A C G T A A C T G G T A C C G T A A C G T A G C T A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GACAGAAKCATT
TTGACAG-------
 A C G T A C G T T A C G C T G A A T G C C T G A A C T G G C T A C G T A A C T G G T A C C G T A A C G T A G C T
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GACAGAAKCATT
TTGACAGC------
 A C G T A C G T T A C G C T G A A T G C C T G A A C T G G C T A C G T A A C T G G T A C C G T A A C G T A G C T
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GACAGAAKCATT
TTGACAGG------
 A C G T A C G T T A C G C T G A A T G C C T G A A C T G G C T A C G T A A C T G G T A C C G T A A C G T A G C T
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GACAGAAKCATT
CACAGN------
 T A C G C T G A A T G C C T G A A C T G G C T A C G T A A C T G G T A C C G T A A C G T A G C T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GACAGAAKCATT
---NGAAGC---
 T A C G C T G A A T G C C T G A A C T G G C T A C G T A A C T G G T A C C G T A A C G T A G C T
A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T