Information for 11-GAGCAGTT (Motif 17)

A C T G G T C A A C T G A G T C T C G A A C T G C G A T A C G T
Reverse Opposite:
C G T A C G T A A G T C A G C T A C T G A G T C A C G T A G T C
p-value:1e-17
log p-value:-3.981e+01
Information Content per bp:1.927
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif4.95%
Number of Background Sequences with motif321.8
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets105.7 +/- 59.0bp
Average Position of motif in Background97.8 +/- 67.3bp
Strand Bias (log2 ratio + to - strand density)5.3
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GAGCAGTT--
BRRCVGTTDN
 A C T G G T C A A C T G A G T C T C G A A C T G C G A T A C G T A C G T A C G T
A G C T C T A G C T A G A G T C T G C A A C T G A C G T C G A T C G T A T C A G

MYB/MA0100.3/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GAGCAGTT---
-NNCAGTTGNN
 A C T G G T C A A C T G A G T C T C G A A C T G C G A T A C G T A C G T A C G T A C G T
A C G T C A T G C T G A A G T C T G C A A C T G C G A T G A C T T C A G T C A G C A G T

ASCL1/MA1100.1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GAGCAGTT----
GCAGCAGCTGGCG
 A C G T A C T G G T C A A C T G A G T C T C G A A C T G C G A T A C G T A C G T A C G T A C G T A C G T
T A C G T A G C C T G A T C A G T A G C C G T A A T C G T A G C A C G T A T C G A T C G A T G C T A C G

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GAGCAGTT--
TGGCAGTTGG
 A C T G G T C A A C T G A G T C T C G A A C T G C G A T A C G T A C G T A C G T
G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAGCAGTT-
-GGCVGTTR
 A C T G G T C A A C T G A G T C T C G A A C T G C G A T A C G T A C G T
A C G T C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A

PB0099.1_Zfp691_1/Jaspar

Match Rank:6
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GAGCAGTT----
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A C G T A C G T A C T G G T C A A C T G A G T C T C G A A C T G C G A T A C G T A C G T A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GAGCAGTT----
SDGCAGGTGCNS
 A C T G G T C A A C T G A G T C T C G A A C T G C G A T A C G T A C G T A C G T A C G T A C G T
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

PB0003.1_Ascl2_1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GAGCAGTT------
NNNNAGCAGCTGCTGAN
 A C G T A C G T A C G T A C T G G T C A A C T G A G T C T C G A A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

PB0047.1_Myf6_1/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GAGCAGTT-----
GAAGAACAGGTGTCCG
 A C G T A C G T A C G T A C T G G T C A A C T G A G T C T C G A A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T
T C A G T C G A C T G A A T C G T C G A C T G A A G T C C G T A A T C G A C T G G A C T A C T G A C G T A G T C G A T C A C T G

Ascl2/MA0816.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GAGCAGTT---
-AGCAGCTGCT
 A C T G G T C A A C T G A G T C T C G A A C T G C G A T A C G T A C G T A C G T A C G T
A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T