Information for 4-CCATTCGATG (Motif 2)

G A T C A G T C G T C A A G C T A G C T G T A C A C T G C G T A A G C T A C T G
Reverse Opposite:
G T A C C T G A A C G T A G T C C A T G T C G A C T G A A C G T A C T G C T A G
p-value:1e-106
log p-value:-2.450e+02
Information Content per bp:1.877
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif7.84%
Number of Background Sequences with motif18.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets99.7 +/- 55.3bp
Average Position of motif in Background124.5 +/- 60.7bp
Strand Bias (log2 ratio + to - strand density)-2.5
Multiplicity (# of sites on avg that occur together)1.34
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0040.1_Lef1_1/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCATTCGATG----
AATCCCTTTGATCTATC
 A C G T A C G T A C G T G A T C A G T C G T C A A G C T A G C T G T A C A C T G C G T A A G C T A C T G A C G T A C G T A C G T A C G T
C T A G C T G A C G A T A G T C A G T C A G T C G A C T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G A C

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCATTCGATG-----
CCATTGTATGCAAAT
 G A T C A G T C G T C A A G C T A G C T G T A C A C T G C G T A A G C T A C T G A C G T A C G T A C G T A C G T A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCATTCGATG----
ATTTCCTTTGATCTATA
 A C G T A C G T A C G T G A T C A G T C G T C A A G C T A G C T G T A C A C T G C G T A A G C T A C T G A C G T A C G T A C G T A C G T
C G T A C G A T C A G T A G C T A G T C A G T C G A C T G A C T C G A T A C T G C G T A C G A T T A G C G C A T C G T A C A G T T G C A

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCATTCGATG-
-CCTTTGAWGT
 G A T C A G T C G T C A A G C T A G C T G T A C A C T G C G T A A G C T A C T G A C G T
A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCATTCGATG-------
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T G A T C A G T C G T C A A G C T A G C T G T A C A C T G C G T A A G C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCATTCGATG----
NNTTCCTTTGATCTANA
 A C G T A C G T A C G T G A T C A G T C G T C A A G C T A G C T G T A C A C T G C G T A A G C T A C T G A C G T A C G T A C G T A C G T
C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CCATTCGATG
BCMATTAG---
 A C G T G A T C A G T C G T C A A G C T A G C T G T A C A C T G C G T A A G C T A C T G
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CCATTCGATG
NSCACTYVAV-
 A C G T G A T C A G T C G T C A A G C T A G C T G T A C A C T G C G T A A G C T A C T G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

PB0083.1_Tcf7_1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCATTCGATG----
NNTTCCTTTGATCTNNA
 A C G T A C G T A C G T G A T C A G T C G T C A A G C T A G C T G T A C A C T G C G T A A G C T A C T G A C G T A C G T A C G T A C G T
C G A T C G A T C A G T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G C A

PB0105.1_Arid3a_2/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CCATTCGATG-----
NNATNTGATANNNNN
 G A T C A G T C G T C A A G C T A G C T G T A C A C T G C G T A A G C T A C T G A C G T A C G T A C G T A C G T A C G T
G T C A C T G A G C T A A G C T G C A T G A C T A T C G T C G A A G C T T C G A A G T C A T C G A C T G C A T G C A G T