Information for 1-TCCCTTCG (Motif 12)

A G C T A G T C G T A C A G T C A C G T A G C T A T G C A C T G
Reverse Opposite:
A G T C A T C G C T G A C G T A A C T G A C T G A C T G C T G A
p-value:1e-4
log p-value:-1.018e+01
Information Content per bp:1.884
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif21.05%
Number of Background Sequences with motif461.7
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets81.2 +/- 41.2bp
Average Position of motif in Background99.0 +/- 79.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TCCCTTCG
--GCTTCC
 A G C T A G T C G T A C A G T C A C G T A G C T A T G C A C T G
A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TCCCTTCG-
GTTTCACTTCCG
 A C G T A C G T A C G T A G C T A G T C G T A C A G T C A C G T A G C T A T G C A C T G A C G T
A T C G G A C T A C G T A G C T A G T C G C T A A G T C G C A T A C G T A G T C G A T C A C T G

EBF1/MA0154.3/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TCCCTTCG----
ANTCCCTNGGGAAT
 A C G T A C G T A G C T A G T C G T A C A G T C A C G T A G C T A T G C A C T G A C G T A C G T A C G T A C G T
C T G A C A G T G A C T G T A C A G T C A G T C G C A T C G A T C T A G T C A G T A C G C T G A T G C A G A C T

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TCCCTTCG
ASTTTCACTTCC
 A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C A C G T A G C T A T G C A C T G
C T G A A T G C G C A T G A C T G A C T A G T C G C T A A T G C G C A T C G A T A G T C G A T C

EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TCCCTTCG----
NABTCCCWDGGGAVH
 A C G T A C G T A C G T A G C T A G T C G T A C A G T C A C G T A G C T A T G C A C T G A C G T A C G T A C G T A C G T
C G T A C T G A A C T G A G C T A G T C G A T C G A T C G C A T C T G A C T A G C T A G T A C G T C G A T G C A G C A T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TCCCTTCG--
NGTCCCNNGGGA
 A C G T A C G T A G C T A G T C G T A C A G T C A C G T A G C T A T G C A C T G A C G T A C G T
C T A G A T C G G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCCCTTCG
BCMATTAG
 A G C T A G T C G T A C A G T C A C G T A G C T A T G C A C T G
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G

PB0137.1_Irf3_2/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TCCCTTCG--
NNGCACCTTTCTCC
 A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C A C G T A G C T A T G C A C T G A C G T A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

HLTF/MA0109.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TCCCTTCG--
AACCTTATAT
 A G C T A G T C G T A C A G T C A C G T A G C T A T G C A C T G A C G T A C G T
C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TCCCTTCG--
--CCTTTGTT
 A G C T A G T C G T A C A G T C A C G T A G C T A T G C A C T G A C G T A C G T
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T