Information for 11-GCTTTATGCCTC (Motif 25)

A C T G A G T C A C G T A C G T A C G T C G T A A C G T A C T G A G T C A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G A C T G A G T C C G T A A C G T C G T A C G T A C G T A A C T G A G T C
p-value:1e-3
log p-value:-7.770e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.26%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets98.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCTTTATGCCTC
-TTTTATGGCTN
 A C T G A G T C A C G T A C G T A C G T C G T A A C G T A C T G A G T C A G T C A C G T A G T C
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCTTTATGCCTC
DGWTTTATGRCN-
 A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C G T A C T G A G T C A G T C A C G T A G T C
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCTTTATGCCTC
NTTTTATGAC--
 A C T G A G T C A C G T A C G T A C G T C G T A A C G T A C T G A G T C A G T C A C G T A G T C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GCTTTATGCCTC-
NGANTTTTATGGCTCN
 A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C G T A C T G A G T C A G T C A C G T A G T C A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCTTTATGCCTC
TGATTTATGGCC-
 A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C G T A C T G A G T C A G T C A C G T A G T C
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCTTTATGCCTC
NTGATTTATGGCC-
 A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C G T A C T G A G T C A G T C A C G T A G T C
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCTTTATGCCTC
-TTTTATTGC--
 A C T G A G T C A C G T A C G T A C G T C G T A A C G T A C T G A G T C A G T C A C G T A G T C
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCTTTATGCCTC
TGATTTATGGC--
 A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C G T A C T G A G T C A G T C A C G T A G T C
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T A C G T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCTTTATGCCTC
-TTTTATGGCB-
 A C T G A G T C A C G T A C G T A C G T C G T A A C G T A C T G A G T C A G T C A C G T A G T C
A C G T G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GCTTTATGCCTC
WYATGCATWATGCAT-
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C G T C G T A A C G T A C T G A G T C A G T C A C G T A G T C
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T A C G T