Information for 2-CTGATTHACATC (Motif 3)

A G T C A G C T C T A G C G T A A G C T A C G T G A T C G T C A A G T C C G T A A G C T A G T C
Reverse Opposite:
A C T G C T G A A C G T A C T G C A G T C A T G C G T A C T G A A C G T A G T C C T G A A C T G
p-value:1e-7
log p-value:-1.773e+01
Information Content per bp:1.808
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif21.05%
Number of Background Sequences with motif68.2
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets71.8 +/- 65.0bp
Average Position of motif in Background97.0 +/- 59.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTGATTHACATC
CTCATTTGCATW
 A G T C A G C T C T A G C G T A A G C T A C G T G A T C G T C A A G T C C G T A A G C T A G T C
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTGATTHACATC
BTVATTWGCATA
 A G T C A G C T C T A G C G T A A G C T A C G T G A T C G T C A A G T C C G T A A G C T A G T C
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CTGATTHACATC-
---ATTAACACCT
 A G T C A G C T C T A G C G T A A G C T A C G T G A T C G T C A A G T C C G T A A G C T A G T C A C G T
A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

PBX2/MA1113.1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTGATTHACATC
GTGATTGACAGG
 A G T C A G C T C T A G C G T A A G C T A C G T G A T C G T C A A G T C C G T A A G C T A G T C
T C A G C G A T C A T G C T G A A C G T C A G T A C T G C T G A A G T C C T G A A T C G T A C G

POU1F1/MA0784.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTGATTHACATC--
CTAATTTGCATATT
 A G T C A G C T C T A G C G T A A G C T A C G T G A T C G T C A A G T C C G T A A G C T A G T C A C G T A C G T
G A T C G C A T T G C A G C T A C A G T G C A T C G A T T C A G G T A C C T G A G A C T G C T A G C A T G C A T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTGATTHACATC
BTGABTGACAGS
 A G T C A G C T C T A G C G T A A G C T A C G T G A T C G T C A A G T C C G T A A G C T A G T C
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTGATTHACATC--
NNAGATNVNWATCTN
 A C G T A G T C A G C T C T A G C G T A A G C T A C G T G A T C G T C A A G T C C G T A A G C T A G T C A C G T A C G T
C T A G T G A C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T T A C G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTGATTHACATC
NTGATTGACAGN
 A G T C A G C T C T A G C G T A A G C T A C G T G A T C G T C A A G T C C G T A A G C T A G T C
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer

Match Rank:9
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CTGATTHACATC--
----TTVACACCTH
 A G T C A G C T C T A G C G T A A G C T A C G T G A T C G T C A A G T C C G T A A G C T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T C A G C T G A G T A C C T G A T A G C A G T C G A C T G A T C

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:10
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CTGATTHACATC--
----TTMACACCTT
 A G T C A G C T C T A G C G T A A G C T A C G T G A T C G T C A A G T C C G T A A G C T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T