Information for 3-CTGTGTYGYYMK (Motif 4)

A G T C A C G T A T C G A C G T A C T G A C G T A G T C A C T G A G C T A G C T G T A C A C G T
Reverse Opposite:
G T C A C A G T C T G A C T G A A G T C C T A G G T C A A G T C C G T A A T G C C G T A A C T G
p-value:1e-7
log p-value:-1.762e+01
Information Content per bp:1.829
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif26.32%
Number of Background Sequences with motif206.7
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets113.6 +/- 57.4bp
Average Position of motif in Background99.1 +/- 67.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CTGTGTYGYYMK
GCTGTG-------
 A C G T A G T C A C G T A T C G A C G T A C T G A C G T A G T C A C T G A G C T A G C T G T A C A C G T
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.2/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CTGTGTYGYYMK
NNCTTTGTTNN---
 A C G T A C G T A G T C A C G T A T C G A C G T A C T G A C G T A G T C A C T G A G C T A G C T G T A C A C G T
A C G T A G C T T G A C C G A T C G A T C G A T T C A G C G A T A C G T G A C T G A C T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTGTGTYGYYMK
YCTTTGTTCC---
 A C G T A G T C A C G T A T C G A C G T A C T G A C G T A G T C A C T G A G C T A G C T G T A C A C G T
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CTGTGTYGYYMK
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A T C G A C G T A C T G A C G T A G T C A C T G A G C T A G C T G T A C A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTGTGTYGYYMK
YSTGGGTGGTCT-
 A C G T A G T C A C G T A T C G A C G T A C T G A C G T A G T C A C T G A G C T A G C T G T A C A C G T
A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:6
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------CTGTGTYGYYMK
AGGVNCCTTTGT------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A T C G A C G T A C T G A C G T A G T C A C T G A G C T A G C T G T A C A C G T
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTGTGTYGYYMK
CCWTTGTYYB---
 A C G T A G T C A C G T A T C G A C G T A C T G A C G T A G T C A C T G A G C T A G C T G T A C A C G T
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTGTGTYGYYMK
CGTGGGTGGTCC-
 A C G T A G T C A C G T A T C G A C G T A C T G A C G T A G T C A C T G A G C T A G C T G T A C A C G T
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTGTGTYGYYMK
GCTGTGGTTT---
 A C G T A G T C A C G T A T C G A C G T A C T G A C G T A G T C A C T G A G C T A G C T G T A C A C G T
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTGTGTYGYYMK
CCTTTGTTTT---
 A C G T A G T C A C G T A T C G A C G T A C T G A C G T A G T C A C T G A G C T A G C T G T A C A C G T
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T