Information for 4-TCCCGTTGDTRG (Motif 5)

G A C T G T A C T A G C A T G C A T C G A C G T C A G T A C T G C A G T C G A T C T G A C T A G
Reverse Opposite:
A G T C A G C T C G T A G A C T T A G C G C T A G T C A A T G C A T C G A C T G A C T G C G T A
p-value:1e-6
log p-value:-1.558e+01
Information Content per bp:1.655
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif21.05%
Number of Background Sequences with motif117.7
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets74.0 +/- 26.0bp
Average Position of motif in Background101.1 +/- 68.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TCCCGTTGDTRG----
-NCCGTTGCTANGNGN
 G A C T G T A C T A G C A T G C A T C G A C G T C A G T A C T G C A G T C G A T C T G A C T A G A C G T A C G T A C G T A C G T
A C G T G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0140.1_Irf6_2/Jaspar

Match Rank:2
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----TCCCGTTGDTRG
ACCACTCTCGGTCAC--
 A C G T A C G T A C G T A C G T A C G T G A C T G T A C T A G C A T G C A T C G A C G T C A G T A C T G C A G T C G A T C T G A C T A G
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TCCCGTTGDTRG----
-NNCGTTGCTATGGNN
 G A C T G T A C T A G C A T G C A T C G A C G T C A G T A C T G C A G T C G A T C T G A C T A G A C G T A C G T A C G T A C G T
A C G T G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TCCCGTTGDTRG
--CCTTTGTT--
 G A C T G T A C T A G C A T G C A T C G A C G T C A G T A C T G C A G T C G A T C T G A C T A G
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.51
Offset:3
Orientation:forward strand
Alignment:TCCCGTTGDTRG---
---CGTGGGTGGTCC
 G A C T G T A C T A G C A T G C A T C G A C G T C A G T A C T G C A G T C G A T C T G A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

Arnt/MA0004.1/Jaspar

Match Rank:6
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:TCCCGTTGDTRG
-CACGTG-----
 G A C T G T A C T A G C A T G C A T C G A C G T C A G T A C T G C A G T C G A T C T G A C T A G
A C G T A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A C G T A C G T A C G T

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:TCCCGTTGDTRG
-CACGTGGN---
 G A C T G T A C T A G C A T G C A T C G A C G T C A G T A C T G C A G T C G A T C T G A C T A G
A C G T G T A C C T G A A G T C C T A G G A C T A C T G A T C G A G C T A C G T A C G T A C G T

ETV2/MA0762.1/Jaspar

Match Rank:8
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----TCCCGTTGDTRG
TATTTCCGGTT-----
 A C G T A C G T A C G T A C G T G A C T G T A C T A G C A T G C A T C G A C G T C A G T A C T G C A G T C G A T C T G A C T A G
G A C T T C G A A G C T C G A T A C G T A G T C A G T C A C T G A T C G A G C T G A C T A C G T A C G T A C G T A C G T A C G T

SPDEF/MA0686.1/Jaspar

Match Rank:9
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----TCCCGTTGDTRG
TACATCCGGGT-----
 A C G T A C G T A C G T A C G T G A C T G T A C T A G C A T G C A T C G A C G T C A G T A C T G C A G T C G A T C T G A C T A G
G A C T C T G A A G T C C G T A G A C T G T A C A G T C A C T G A T C G A C T G G C A T A C G T A C G T A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---TCCCGTTGDTRG
ACATCCTGNT-----
 A C G T A C G T A C G T G A C T G T A C T A G C A T G C A T C G A C G T C A G T A C T G C A G T C G A T C T G A C T A G
C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T A C G T A C G T A C G T